Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00638 ATGGAGGTTTCATGGTTTGATGAGGCTGATCATTCGAGTGGCGCAATCGGTTCAAGGCTCTCGACGGATGCTACATCTGTTCGTGCCCTTGTTGGGGATGCATTAGGACTACTAGTTCAAAATATTGCAACAGCATGTACAGGCTTGATCATTGCTTTCGTTGCAAGCTGGCAATTGGCGTTGATCATTGTTGTCATAGCCCCTCTTGTTGGATTGAATGGATATGTTCAAATGAAGTTCTTGAAAGGCTTCAGTTCAGATGCAAAGCGGATGTATGAGGAAGCGAGCCAGGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTGGCATCTTTCTGCGCTGAAGAGAAAGTTATGGAATTCTATAAGAAGAAATGTGAAGGTCCAAGGAAAACAGGAATAAGGCAAGGCTTGATTAGTGGAATAGGATTCGGGGTTTCATTTTTTCTTCTCTATTGCGTCTATGCAACCTGTTTCTATGCTGGAGCTAGATTTGTGAAGGATGGCAAGGCATCATTCTCAGATGTTTTAAGGGTTTTCTTTGCTTTAACTATGGCAGCTAACGCAATTTCCCAATCAAGCTCACTTGCACCTGATTCTAGCAAAGCCAAGTCAGCTGCTGCTTCCATATTTGGACTTCTTGATATGAAGTCAAAGATAGATCCAAGTGATGAGTCTGGGACAACACTGGATAATGTAAATGGTGAAATTAAGTTTCGCCATGTAGGCTTTAAGTATCCATCTAGACCGGATATACAGATTTTTCGAGACCTAAGTTTGACCATCCATTCTGGCAAAACAGTGGCCCTTGTTGGTGAGAGTGGAAGCGGGAAATCCACAGTGATTGCTTTGTTACAAAGATTCTTCGATCCAGATTTTGGTCAAATCACACTTGATGGGATAGAAATTCAGAAATTGCAGCTCAAGTGGTTGAGGCAGCAGATAGGGCTTGTAGGTCAAGAGCCAGTATTATTCAATGACACCATTCGTGCCAACATTGCATATGGTAAAGGAGGCAATGCAACTGAAGCAGAAATCATACAAGTAGCAGAACTGGCCAATGCTCATGGCTTTATTAGTGCCTTACAACAGGGTTATGATACTGTGGTGGGAGAGAGGGGAATACAGTTATCTGGTGGGCAGAAGCAACGTGTAGCCATTGCACGTGCTATAATAAAGAGTCCAAAGATATTGCTACTTGATGAGGCCACAAGTGCATTGGATGCAGAGTCGGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATTGTGAATAGAACCACTGTGGTTGTGGCACATCGTCTATCCACAATTAAAAATGCAGATGTCATTGCTGTAGTTAAAGATGGAGTTATTGTGGAAAAAGGAAGGCATGAGACCCTAATTAGCATGGAGGATGGTTTTTATGCTTCCTTGGTCCAACTTCATTATAGTGCGTCAACAGCATGA 1449 0.4258 MEVSWFDEADHSSGAIGSRLSTDATSVRALVGDALGLLVQNIATACTGLIIAFVASWQLALIIVVIAPLVGLNGYVQMKFLKGFSSDAKRMYEEASQVANDAVGSIRTVASFCAEEKVMEFYKKKCEGPRKTGIRQGLISGIGFGVSFFLLYCVYATCFYAGARFVKDGKASFSDVLRVFFALTMAANAISQSSSLAPDSSKAKSAAASIFGLLDMKSKIDPSDESGTTLDNVNGEIKFRHVGFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFFDPDFGQITLDGIEIQKLQLKWLRQQIGLVGQEPVLFNDTIRANIAYGKGGNATEAEIIQVAELANAHGFISALQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVIVNRTTVVVAHRLSTIKNADVIAVVKDGVIVEKGRHETLISMEDGFYASLVQLHYSASTA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00638 482 ProSitePatterns ABC transporters family signature. 377 391 IPR017871 GO:0005524
Aip06g00638 482 PANTHER - 1 478 - -
Aip06g00638 482 Pfam ABC transporter 256 405 IPR003439 GO:0005524
Aip06g00638 482 SMART AAA_5 264 457 IPR003593 -
Aip06g00638 482 Gene3D - 227 477 IPR027417 -
Aip06g00638 482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00638 482 CDD ABC_6TM_Pgp_ABCB1_D2_like 1 220 - -
Aip06g00638 482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 237 474 IPR003439 GO:0005524
Aip06g00638 482 Gene3D ABC transporter type 1, transmembrane domain 204 226 IPR036640 GO:0005524|GO:0016021
Aip06g00638 482 Gene3D ABC transporter type 1, transmembrane domain 2 203 IPR036640 GO:0005524|GO:0016021
Aip06g00638 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 475 IPR027417 -
Aip06g00638 482 CDD ABC_MTABC3_MDL1_MDL2 237 475 - -
Aip06g00638 482 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 478 - -
Aip06g00638 482 Pfam ABC transporter transmembrane region 1 185 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00638 482 SUPERFAMILY ABC transporter transmembrane region 2 221 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00638 Aip-Chr6 8352052 8353853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00638 2 479 Calmodulin-binding Proteins AT2G36910 42.797 6.19e-129 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00638 K05658 - gmx:100800034 779.245