Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00619 ATGGCATTGGACCCAGATATTGAAGAAAAGTATGTTCACAACAGCAAGGTCATGCTAGGATCTGCAATTCTTCTCGTTATACTCATCCTCGTAATCATCCTATATCGTTCTTATGCTCACTTCTGCGCACGCCGCCGCCGCCATCTCTTCCCTCACACTCTTCCAGCTTCTTCCACTTCCGCCACCGCCCCTGTTTTCAACGACCGACTGGATCCAACCATTCTCAAGTCCCTACCGACCTTTACTTTCTCCTCCGCCGTGCACCGCCCCCTGCAAGACTGCGCCGTCTGCCTTTCGGAGTTCGAAGACGGAGACAAGGGCCGTGTGCTGCCGAATTGCAGCCACGCGTTCCACTGCCAATGCATCGACGCGTGGTTCGCATCTCACTCCAACTGCCCTCTCTGCCGGTCACCGGTTAAACGGGTTACCACGCCGGTTGAAGCGTGCTCGATTCCGGTTTCAGTTGAATTAGCGGTTGAATTGGAAGCTGGTGGTTGCTCGTCGCTTCCTCCGCCGGTGATGTGCCCTAGGAAGCCGTTGAATGTGGTGGTGGAGATTCCGGAAGAGGAGAGAGGGTTGGATCATCGGATTCTTTCGCTGAAGAAGTTTTGCAGCGTCGTTCACTCTAGTTGTATAGAATTTCAGGACTCTTGCCACCTAAGGAAGGTTGATATATTTGAATTGAAGCGAATCCCAAGGATGAACATCACAACAACAGTCACAATATATATCTCTTGTGCAGTGTTATTATTTCATTTGATGCGAGAAAACAGGGGAAAAACAGGGGAACGCACAACAACATCAAGAATCTGGAATTCTCCAAAGTGGTCTAAACAATAA 840 0.5 MALDPDIEEKYVHNSKVMLGSAILLVILILVIILYRSYAHFCARRRRHLFPHTLPASSTSATAPVFNDRLDPTILKSLPTFTFSSAVHRPLQDCAVCLSEFEDGDKGRVLPNCSHAFHCQCIDAWFASHSNCPLCRSPVKRVTTPVEACSIPVSVELAVELEAGGCSSLPPPVMCPRKPLNVVVEIPEEERGLDHRILSLKKFCSVVHSSCIEFQDSCHLRKVDIFELKRIPRMNITTTVTIYISCAVLLFHLMRENRGKTGERTTTSRIWNSPKWSKQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00619 279 Pfam Ring finger domain 93 136 IPR001841 -
Aip06g00619 279 SUPERFAMILY RING/U-box 74 142 - -
Aip06g00619 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 152 - -
Aip06g00619 279 PANTHER RING-H2 FINGER PROTEIN ATL64 9 152 - -
Aip06g00619 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 142 IPR013083 -
Aip06g00619 279 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Aip06g00619 279 SMART ring_2 94 135 IPR001841 -
Aip06g00619 279 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00619 Aip-Chr6 8074105 8075394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00619 9 140 Rapid Response to Elicitors AT3G16720 42.466 1.76e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00619 - - gmx:100800433 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00619 06 8074105 8075394 Aip06g00619 06 8074105 8075394 ECH