LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g00603	ATGAGTAGGCGTGGGAGCAGAACAGTCTACGTTGGGAACCTCCCTGGTGATATTCGTGAAAGAGAAGTAGAAGATTTGTTTTCAAAGTATGGACATATAACTCACATTGATCTCAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTGGAGTTTGAAGACTATCAAGATGCTGAGGATGCGATTCGAGGGCGTGATGGATATGATTTTGATGGCCACCGCTTGAGGGTGGAGCCTGCACATGGAGGGCGTGGTCATTCATCTTCGAGAGATCGATATAGTAGTCACAGCAACGGTCGAGGTGGACGTGGGGTATCTAGGCGCTCGGAATATCGTGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGCGAAAGGCCGGGGATGTTTGCTTTTCCCAAGTTTTCCATGATGGAAGAGGAACTACTGGGATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGACGACTCTGAGTTTCGGAATGCATTTTCCAGGGGCTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGCAGTCGTAGCTACAGTCGGGGCCGGAGCCCAAGCAAATCTCCAAAGGGGAAGTCTTCACCACGGTCACCAGCTAAATCTCCACCAAGATCTGCTTCCCGTTCTCGTTCAAGATCAAGGTCTCGTTCTTTATCAGGATCACGATCAAGGTCTAGGTCTCCATTGCCTGTGCGTAATAAAAGCCCAAAAAGACGCAGTGCTAGCAGGAGTCCAAGTAGAAGCAGGAGCAGGAGCAAGAGTTTGTCCCGGTGA	894	0.4933	MSRRGSRTVYVGNLPGDIREREVEDLFSKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRGRSPSKSPKGKSSPRSPAKSPPRSASRSRSRSRSRSLSGSRSRSRSPLPVRNKSPKRRSASRSPSRSRSRSKSLSR	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g00603	297	PANTHER	PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN	3	289	-	-
	Aip06g00603	297	MobiDBLite	consensus disorder prediction	73	107	-	-
	Aip06g00603	297	MobiDBLite	consensus disorder prediction	271	286	-	-
	Aip06g00603	297	MobiDBLite	consensus disorder prediction	206	220	-	-
	Aip06g00603	297	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	3	289	-	-
	Aip06g00603	297	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	189	IPR000504	GO:0003723
	Aip06g00603	297	MobiDBLite	consensus disorder prediction	221	246	-	-
	Aip06g00603	297	Gene3D	-	2	110	IPR012677	-
	Aip06g00603	297	Gene3D	-	111	188	IPR012677	-
	Aip06g00603	297	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Aip06g00603	297	SMART	rrm1_1	112	185	IPR000504	GO:0003723
	Aip06g00603	297	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Aip06g00603	297	CDD	RRM2_SF2_plant_like	111	186	-	-
	Aip06g00603	297	SUPERFAMILY	RNA-binding domain, RBD	6	176	IPR035979	GO:0003676
	Aip06g00603	297	MobiDBLite	consensus disorder prediction	73	108	-	-
	Aip06g00603	297	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	175	IPR000504	GO:0003723
	Aip06g00603	297	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	76	IPR000504	GO:0003723
	Aip06g00603	297	MobiDBLite	consensus disorder prediction	186	297	-	-
	Aip06g00603	297	CDD	RRM1_SF2_plant_like	8	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g00603	Aip-Chr6	7876469	7880969	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g00603	2	195	Eukaryotic Initiation Factors Gene Family	AT4G34110	25.123	5.66e-07	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g00603	K12890		-	gmx:100789847	341.658