Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00577 ATGACAGATCCAAGTGCAGAAGTAGTAGCTCTGTCACCAACAACATTAATGGCAACAAACAGATTCGTGTGTGAGATATGCAACAAAGGTTTCCAGAGGGACCAAAACCTTCAACTACACAGGAGAGGACACAATCTACCATGGAAGCTAAGGCAAAGAACAACCACAGAGGTCAAGAAGCGTGTCTACGTCTGCCCTGAGCCCACGTGCGTTCACCACAACCCATCACGTGCTCTTGGCGACCTCACCGGCATCAAGAAACACTTCAGCCGCAAACACGGCGAAAAGAAATGGAAGTGTGACAAGTGTTCCAAACGCTACGCTGTTCAATCTGATTGGAAGGCCCACCTCAAAACTTGCGGCACTCGCGAGTATAAGTGTGATTGCGGCACCATCTTTTCCAGAAGAGACAGTTTCATTACTCATCGTGCTTTCTGTGATGCTTTGACCGAAGAAAATAACAAACTTTCTTCCACCCACCATCAGTGTTTGTTAACAACTGGCATGCCCCCTAGTCAGATTCCATTAACCACTTCTTCTTCTTCATCAGATCAATTATTCATCACTGATCCACCACTTATCATTCCAACAACAACTCCTTTCAATAACTCCATCTTCTCATCAACAACTACTTCTTCTTGTTCTTCTTCAACGCTTCAGCTGAGTTCTACTGGCTTCAACAATGTTATTCTTTCTTCTAATCCATCTTCATCATCGCCTCATATGTCTGCAACTGCTTTGTTGCAGAAAGCAGCTCAAATGGGTGCAACTGCAAGTAACAACAGCATGAATTATTCACCCATGATGCAGAAAAGCTTCTCCATGGGAACAACCACCATGGCTGGAGTTAGTGCTGGCCATGATGCTGCATTTACAAACCAATTGTTTCAGAAAGAAATCGTCTCACAACTGTTTGATGCAAACACTACTACTAATAGTAGTAGTAATAATGATATGGGAATGTATGGTCAAATGTTCATGGGAACAATCACTACTGAGCACAGTAATAATAATAATAATAATGGGTTGATGAAGATTAGTAGTGATGTGGAACAAGAGATTAGTGATGATGATAATAATAATAACAATACGATAATGGTGGAGGCATCAAGGTTTGGAGGAGGGAGTGGAAGGGATGATGATATTGCAACTGTTCATGATTTCTTGGGAATTGGTGGAGCTTCAATGGCTTCAACAGCAACAGTGAGTTTGCATGAATCAGAGCAACAGCAAAGATTAGTAGCAGTAGAGACATTGAATCAGCAGAGGTTGCAGATTATGAACCACTTTCATCACCATATTCCTCATCATGCTGCAGATTCAGCTATTGACAAAACTATGTGGGATGTTTGA 1353 0.4205 MTDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYVCPEPTCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKLSSTHHQCLLTTGMPPSQIPLTTSSSSSDQLFITDPPLIIPTTTPFNNSIFSSTTTSSCSSSTLQLSSTGFNNVILSSNPSSSSPHMSATALLQKAAQMGATASNNSMNYSPMMQKSFSMGTTTMAGVSAGHDAAFTNQLFQKEIVSQLFDANTTTNSSSNNDMGMYGQMFMGTITTEHSNNNNNNGLMKISSDVEQEISDDDNNNNNTIMVEASRFGGGSGRDDDIATVHDFLGIGGASMASTATVSLHESEQQQRLVAVETLNQQRLQIMNHFHHHIPHHAADSAIDKTMWDV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00577 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 419 - -
Aip06g00577 450 Pfam Zinc-finger of C2H2 type 22 44 - -
Aip06g00577 450 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 2 419 - -
Aip06g00577 450 SUPERFAMILY beta-beta-alpha zinc fingers 21 118 IPR036236 -
Aip06g00577 450 Gene3D Classic Zinc Finger 2 68 - -
Aip06g00577 450 SMART c2h2final6 63 93 IPR013087 -
Aip06g00577 450 SMART c2h2final6 98 118 IPR013087 -
Aip06g00577 450 SMART c2h2final6 22 44 IPR013087 -
Aip06g00577 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Aip06g00577 450 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Aip06g00577 450 Gene3D Classic Zinc Finger 76 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00577 Aip-Chr6 7568514 7569866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00577 1 263 IDZ Gene Family AT3G50700 56.230 3.04e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g00577 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00577 - - adu:107492404 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00577 06 7568514 7569866 Aip06g00577 06 7568514 7569866 ECH
Aip06g00577 06 7568514 7569866 Aip09g01671 09 38355801 38364161 ECH