Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00570 ATGGAGCTTTACGGTCGCAACCCGGGGAGGAACGGGTCGAACCCGGGGAATCAGCCCGAATGGCGCTCGCCGGGCCCCGATACTGGCCTCGAAGAATCAATGTGGCAGTTGACTCTGGCTAGCAGCGAATCGTACCCGGAGCGACCCAGTGCTCCGAATTGCGTGTATTACATGCGAACTGGGTACTGCGGATATGGTGCAAGGTGCCGTTACAATCACCCTCGTGACCGTGCTGCGGTTGCTGCGGCTGTAAGAGCAACAGGGGAGTACCCGGAAAGAGCAGGGGAACCTCCATGTCAGTATTATCTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGATCTTTGAGCCAAGCACCGCTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTGTGACTTGTAAATTCCATCATCCTGCTGCTGGCACATCATTGCCGGCTTCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACGGTTCCTCTGCCTGACCAATACGGGGGAGCATCCACAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGGCTGGTTCGTACGTTCAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGAGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTTAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCTACTTCTCTATATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGGCCATATACTCCACTGCCCTCTTCTATTGGCCCCTCAGGCAGTGGTCAGAAGGAGGAAGTTTTTCCTGAACGTCCTGGCCAACCTGAATGCCAATACTATCTTAAAACAGGGGACTGTAAATTTGGATCGGCTTGTCGATATGATCATCCACGGGATAGGGGTGTGACACGACCACTCCTCAGCCCCATTGGTCTTCCTCTTCGTCCGAAAACAGGGGGTTCAACCTTGTGCATTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGA 1095 0.505 MELYGRNPGRNGSNPGNQPEWRSPGPDTGLEESMWQLTLASSESYPERPSAPNCVYYMRTGYCGYGARCRYNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPAAGTSLPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLAGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSIGPSGSGQKEEVFPERPGQPECQYYLKTGDCKFGSACRYDHPRDRGVTRPLLSPIGLPLRPKTGGSTLCILFAKRALQVWLHMQI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00570 364 Gene3D - 126 175 - -
Aip06g00570 364 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Aip06g00570 364 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Aip06g00570 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 342 - -
Aip06g00570 364 SUPERFAMILY CCCH zinc finger 299 323 IPR036855 GO:0046872
Aip06g00570 364 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Aip06g00570 364 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Aip06g00570 364 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Aip06g00570 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Aip06g00570 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Aip06g00570 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Aip06g00570 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Aip06g00570 364 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Aip06g00570 364 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Aip06g00570 364 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Aip06g00570 364 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Aip06g00570 364 MobiDBLite consensus disorder prediction 1 32 - -
Aip06g00570 364 Gene3D - 44 125 - -
Aip06g00570 364 Gene3D - 286 353 - -
Aip06g00570 364 PANTHER PROTEIN PHOSPHATASE RELATED 1 342 - -
Aip06g00570 364 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Aip06g00570 364 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00570 Aip-Chr6 7476973 7481978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00570 1 356 C2H2 Transcription Factor Family AT5G18550 50.400 7.92e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip06g00570 zf-CCCH 5.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00570 - - lja:Lj5g3v1665190.3 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00570 06 7476973 7481978 Aip06g00570 06 7476973 7481978 ECH