Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00560 ATGACTGGTCCTCATCAAAATTCAACACACTCTGCATCACACACACAACAAGATAAAGCTTCAGCACCATCACCATGCGATTACTGCAACAGCTCCAGATCAGTTCTGTACTGCAGAGCAGATTCAGCGAAGCTCTGTTTCAAATGCGACCGCGAGGTTCATTCAACAAACCAGCTCTTCTCGAAGCACACACGCACTCTTCTCTGTGACTCTTGCTACGATTCCCCTGCTTCCATACTCTGTTCCACGGAATCCTCTGTTCTCTGCCATAATTGTGACTGGGAAAGTCACAACCTTTCTCTTCCAACCGTACACGAGAGAGGTCCCCTTGAAGGATTCACTGCTTGCCCTTCCGTTTCGGAGCTTTTAACCATTCTGGGGTTTGAAGATGTTGGGAAAAAGGCTCTGCTTTATGGTGGTGATGGTGGTGGTGGTGATGGAGGAGGAGGGGAAAAGAATTCTGCTGACGACTTTATGGGGTGTGAGATTGAAGGCTTTTCAGATTTCTTCGTTTGGGATGCTCCTTCTGTTGTTAGTCTCGATGATTTGATTTCTTCTTCTGCTCCTTCTCATAACTTTCAGGCTATGGAGGTTCCTCCACTCCCCAAGAATCGCAAGTCTTCTTGTGGGAGACATAGAGAAGAGATTCTTAGTCAGCTTCGTGAACTCGCAAAGTCTGAGCCTTTAGACTTAGACACTGAACAACAACAATACTTGCAATCAGGGAACATGTCCACAGATCTTGAACATGATTTCAAGACTGATAAATTCCCTTCTTATGAGTGGCATAGAAGAAGCAGTGAACCTATGAATCAAGTTGTTCCTCTGAATACATTGTTGAATGAAGAAGTTGCAGTTGAACATCCAACTTCTGCAGTTTCGGAGAACAATGAGGGGAAAACACCGATATCTTTCAAATCCGAAACTGTATCAGTTGTTCCAAAAGCTACTCCATGTGAGTTAACAAGTCAAGAAAGAGATTCTGCTTTGTTACGGTACAAGCAAAAGAAGAAAACCAGAAGATATGAGAAGCACATAAGATATGAATCACGAAAAGTTCGGGCACAAAGCAGGATAAGAGTCAAGGGCCGATTTGCTAAGATGGAACACTGA 1113 0.4394 MTGPHQNSTHSASHTQQDKASAPSPCDYCNSSRSVLYCRADSAKLCFKCDREVHSTNQLFSKHTRTLLCDSCYDSPASILCSTESSVLCHNCDWESHNLSLPTVHERGPLEGFTACPSVSELLTILGFEDVGKKALLYGGDGGGGDGGGGEKNSADDFMGCEIEGFSDFFVWDAPSVVSLDDLISSSAPSHNFQAMEVPPLPKNRKSSCGRHREEILSQLRELAKSEPLDLDTEQQQYLQSGNMSTDLEHDFKTDKFPSYEWHRRSSEPMNQVVPLNTLLNEEVAVEHPTSAVSENNEGKTPISFKSETVSVVPKATPCELTSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAQSRIRVKGRFAKMEH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00560 370 MobiDBLite consensus disorder prediction 1 24 - -
Aip06g00560 370 Pfam CCT motif 326 368 IPR010402 GO:0005515
Aip06g00560 370 ProSiteProfiles CCT domain profile. 326 368 IPR010402 GO:0005515
Aip06g00560 370 CDD Bbox1_BBX-like 25 68 - -
Aip06g00560 370 SMART bboxneu5 69 110 IPR000315 GO:0008270
Aip06g00560 370 SMART bboxneu5 21 68 IPR000315 GO:0008270
Aip06g00560 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 370 - -
Aip06g00560 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 24 370 - -
Aip06g00560 370 ProSiteProfiles Zinc finger B-box type profile. 64 110 IPR000315 GO:0008270
Aip06g00560 370 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00560 Aip-Chr6 7236300 7239003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00560 26 341 C2C2-CO-like Transcription Factor Family AT2G47890 40.663 7.15e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip06g00560 CCT 1.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00560 - - gmx:100777428 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00560 06 7236300 7239003 Aip06g00560 06 7236300 7239003 ECH