Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00559 ATGGCAGAGCTAAGTGCGGCCGCAACCTTCACACCCAGCGATGAAGAACTCATTCATTTCCTTTCCGACAAGGTGAAAGGCCAATCAATGGACGAGGACGCCGCCATCAACATCCACGAATGTGAATACTTGTACGGCCGCAACAAGAACCCTTGGGACATTTGGCGGGACTTCGCCGGCGACGTTGATGCCGGCAGGACCGCCCTTTTCTTCTTCTCTCCCACCAAAAAGCACCATTCCACAGCCTCTCGCCCCATCGGAGCCGGCGTCTGGGAAGCTGAAGCCGAAACCATTGACGGCGAAAGCATCGTTGGCAAGGGCAAGAACCGCCGTATTGGGACCAAGAAATGTTTCGTCTTTGACAAGAGTGGCACCTCCTACGATGGTGCATGGATCTTGCATGAATACACTCTTCATGGATCCTCGCTCCACACTAATACTTCAGTGGATCATAGCTATGTTATATGCAAATTGATAAAGAATGTAGAAGGTGAAGCTCATCCAGTTGAGGTGCAGTTTGGAGACAAAAGAAAAAGGCACGGTCAATCTGCCACCACCAGCGGCGTTCAAATTGATGTTAACGCTCCTCATTCATATAGGAACACTAAAGAGCAAGAGGTCCAATTCATACCAAATGAACTTGGCAGGCGAATGTTGTTGGAAATGTTTGAGGGTAAGAAAGATGATGAGGATGGTTTAACTCTTTCTGATGGTTTAACTCATCAGAAACCTCATGCAGCTGCAAGGGGGAACAAGAAGAGGTGGAAAAGGCATCTAATTATTGCATAA 789 0.4816 MAELSAAATFTPSDEELIHFLSDKVKGQSMDEDAAINIHECEYLYGRNKNPWDIWRDFAGDVDAGRTALFFFSPTKKHHSTASRPIGAGVWEAEAETIDGESIVGKGKNRRIGTKKCFVFDKSGTSYDGAWILHEYTLHGSSLHTNTSVDHSYVICKLIKNVEGEAHPVEVQFGDKRKRHGQSATTSGVQIDVNAPHSYRNTKEQEVQFIPNELGRRMLLEMFEGKKDDEDGLTLSDGLTHQKPHAAARGNKKRWKRHLIIA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00559 262 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Aip06g00559 262 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 190 - -
Aip06g00559 262 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Aip06g00559 262 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Aip06g00559 262 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 9 190 - -
Aip06g00559 262 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00559 Aip-Chr6 7232478 7234054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00559 1 170 NAC Transcription Factor Family AT5G24590 30.556 8.15e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip06g00559 NAM 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00559 - - ahf:112756623 475.322