Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00547 ATGGCGGAAGCGAAGGAAGAGAGCAAATCTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTTCCGAAGCACATGACGGAATCGGAACTGCTGGCAATGTTCAAGGAGTTCGCGTTGGTCGACGAGGTCAACATCATCAAGGACAAAGCCACGCGCTCCTCTCGAGGTTGTTGCTTCGTGATTTGTCCGTCGAGGGAAGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAAACGCTGCCAGGGGCTTCTAGTCCATTGCAAGTAAAGTATGCTGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATCGGAATGCTTCCAAAGAATGTTTCTGAAGTTGAGGTCTCTGCACTTTTCTCCAAGTTCGGAACTATAAAAGATTTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGCTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCCCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCGAGTGTTCCTTTGGTAGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGACGAGCTCAGAGAGCACAGTCCCAAGCTTCCAATGCGCCACATGCTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCGTATAATGGATACGGTTACCAGGCTCCTGGAGGTTATGGGATCATGCCATACCGGATGCCACCGATGCAGAATCAACCTGGTTACCATAACATGATGCCGCACATGAATCAAGCAAATGCACTACGGCCCGAACTTGGCCCCAATATGAACCCAAGGAATTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTTCCAGGCCTACAACATCCAATCGCATACGCAGGAGGCATGATTAGTCCAAGGCCTATGAGTAGTTCTCCTGGTTCTATTTCACCTGCAGGTGGTAATGGCAACTCTGGTACATCATCTTCAAGTGCTAGCAAGAGTTCTGGGGGTCAAGTTGAAGGTT 1030 0.4728 MAEAKEESKSSEESVKLFVGQVPKHMTESELLAMFKEFALVDEVNIIKDKATRSSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKFGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQRAQSQASNAPHADSQHPSLFGALPMGYVPPYNGYGYQAPGGYGIMPYRMPPMQNQPGYHNMMPHMNQANALRPELGPNMNPRNYHVPPASYVGSYPAVPGLQHPIAYAGGMISPRPMSSSPGSISPAGGNGNSGTSSSSASKSSGGQVEG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00547 343 MobiDBLite consensus disorder prediction 305 343 - -
Aip06g00547 343 Gene3D - 2 98 IPR012677 -
Aip06g00547 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Aip06g00547 343 MobiDBLite consensus disorder prediction 185 208 - -
Aip06g00547 343 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Aip06g00547 343 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Aip06g00547 343 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Aip06g00547 343 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Aip06g00547 343 SMART rrm1_1 104 179 IPR000504 GO:0003723
Aip06g00547 343 SMART rrm1_1 16 92 IPR000504 GO:0003723
Aip06g00547 343 SUPERFAMILY RNA-binding domain, RBD 101 193 IPR035979 GO:0003676
Aip06g00547 343 CDD RRM1_2_CELF1-6_like 16 92 - -
Aip06g00547 343 Gene3D - 99 192 IPR012677 -
Aip06g00547 343 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 314 - -
Aip06g00547 343 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Aip06g00547 343 MobiDBLite consensus disorder prediction 309 343 - -
Aip06g00547 343 CDD RRM1_2_CELF1-6_like 104 179 - -
Aip06g00547 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Aip06g00547 343 PANTHER RNA BINDING PROTEIN 7 314 - -
Aip06g00547 343 MobiDBLite consensus disorder prediction 193 207 - -
Aip06g00547 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Aip06g00547 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00547 Aip-Chr6 7127528 7131379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00547 4 250 Eukaryotic Initiation Factors Gene Family AT1G71770 26.441 1.07e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00547 K13207 - gmx:100813239 573.933