Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00546 GACCACCCGGTGCCAACCTGTTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCCACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTCGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCAGCCATTAGTATGATGAATGGGTGCCAATTAGGAGTTTCATCCAGGATAAGAGGACTCTTTTCCTTTGGCTCTCTGCGTCCTGCGGCAACAACAACGTTTTCTTTTTTTCCTCTGTTTTCGTTTACTTTTCTTGTTTCTCACAGGTTGAGGTAG 335 0.4179 PPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGVSSRIRGLFSFGSLRPAATTTFSFFPLFSFTFLVSHRLR 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00546 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 70 IPR000504 GO:0003723
Aip06g00546 110 CDD RRM3_CELF1-6 6 71 - -
Aip06g00546 110 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 2 77 - -
Aip06g00546 110 Gene3D - 1 77 IPR012677 -
Aip06g00546 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 75 IPR000504 GO:0003723
Aip06g00546 110 PANTHER RNA BINDING PROTEIN 2 77 - -
Aip06g00546 110 SMART rrm1_1 5 77 IPR000504 GO:0003723
Aip06g00546 110 SUPERFAMILY RNA-binding domain, RBD 2 71 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00546 Aip-Chr6 7126768 7127406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00546 5 71 Eukaryotic Initiation Factors Gene Family AT1G22760 44.776 9.05e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00546 K13207 - ahf:112756610 148.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00546 06 7126768 7127406 Aip06g00546 06 7126768 7127406 ECH