Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00543 ATGCAACTTAAAGATTGTCATATTGTTATATTTCATACTGGATCTCATTTTTGGACAACCTGGTGCCAACCTGTTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTACCACTGCTTTTGTCACATACCTAAAGTTTTTGTCGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCAGCCATTAGTATGATGAATGGGTGCCAATTAGGAGTTTCATCCAGGATAAGAGGACTCTTTTCCTTTGGCTCTCTGCGTCCTGCGGCAGCAACAAGGTTTTCTTTTTTTCCTCTGTTTTCGTTTGCTTTTCTTGTTTCTCACAGGTTGAGGTAG 372 0.3952 MQLKDCHIVIFHTGSHFWTTWCQPVYLSHTSRIWRSRAYHCFCHIPKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGVSSRIRGLFSFGSLRPAAATRFSFFPLFSFAFLVSHRLR 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00543 123 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 46 90 - -
Aip06g00543 123 Gene3D - 38 90 IPR012677 -
Aip06g00543 123 SUPERFAMILY RNA-binding domain, RBD 47 84 IPR035979 GO:0003676
Aip06g00543 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 83 IPR000504 GO:0003723
Aip06g00543 123 PANTHER RNA BINDING PROTEIN 46 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00543 Aip-Chr6 7001239 7002722 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00543 39 80 Eukaryotic Initiation Factors Gene Family AT3G11400 47.727 4.00e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00543 K13207 - ahf:112756610 80.4925