Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00541 ATGTCTTCCTCAAAGGTTTTCGATCAAATAGGGCTCAGGGAAGGGGACGACGTCGTTTTGTGGCTCAGGGATCGATCTGTCCTTCGATTTTTAGTACCCCCTCCAGCTCAGCAACTTAAACGGACAGGTCACACTCCCCCCAGCCACACAGCCTTCTCTGGTGACGTTTTTCAACCCAAATCgacggaggggttcaattgtcccagattttacaagCTCTTCAAAGCACACTTAGGGAATTTTTTTACCCTTTCCCCACAAAGCACACTGATCAGATCGCGCCCTCACCTTCGATTCACCATCAGAGAAACCCTTCGTGCCCTCGCCTCTCACCTTCGCCACTCACCTTCCCCACTCACCGTCGCCACTCACGTCGCTCCTTCCCCACTCAGCACTCACCACTCACGACTTCCCCACTCACCGTCAGCTTCCTGCATTGATCGTCAGCTGCGCCCTCCTGCATTGATCGTTAGCTGCGCCCTCACCATCGTCGTATCTGCCCTCAGCTCATCCTCTCAGCGCTCAGCTCGTCTCTCTGCGCCCACATCATTGAGAAGGGCTATGTTCACTCTGCAGGAGCGACTGTTGTTCATCAATTCTGCCATCTTGGCTCTTTCTCTTTTCTTGGTGGTGGTTATGTGGTTTCGCAAGATAGGTTATACTAACAAAAATTTTAAAATTACTCGTCTTCGATGTCATCGGTGCGAGCTCGTGGAGGGAGAGAGGGAATCAGAAGAATTGCAATCAGATGAAAATAAAGCTTCTACAGAGAGAAAAAAAAATAAAAGAAGACTCAAAATACCTTCCCAGATTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCACGGAGGAAATGAAACAAGATCTTGCTGAGGAGTTAGGGTTGACTGAGAAGCAAATTTCTGGATGGTTTTGCCACATAAGTGGACGGCAAGATTCATGCGGAAGCAGCAAACATGGTGATTACCGTTATGTGGATCCGAAAGAAGTAGAAAGTCATGATAAATGCTTTGCTTGCTTTTCTGAAAGGGTTGCAATAGACTTTGATCCAAACTCCTTGCGAAATATTCTACCTAAAGCAGTCTCATCATTGGAATGGGCAATCTCAAAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCTGGACTTGGGAGAGCACCAGGGGTGACAATAGCTTATTTGTTCTGA 1197 0.4578 MSSSKVFDQIGLREGDDVVLWLRDRSVLRFLVPPPAQQLKRTGHTPPSHTAFSGDVFQPKSTEGFNCPRFYKLFKAHLGNFFTLSPQSTLIRSRPHLRFTIRETLRALASHLRHSPSPLTVATHVAPSPLSTHHSRLPHSPSASCIDRQLRPPALIVSCALTIVVSALSSSSQRSARLSAPTSLRRAMFTLQERLLFINSAILALSLFLVVVMWFRKIGYTNKNFKITRLRCHRCELVEGERESEELQSDENKASTERKKNKRRLKIPSQIMALEKFYNEHKYPTEEMKQDLAEELGLTEKQISGWFCHISGRQDSCGSSKHGDYRYVDPKEVESHDKCFACFSERVAIDFDPNSLRNILPKAVSSLEWAISKGKGRVYVHCTAGLGRAPGVTIAYLF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00541 398 CDD homeodomain 260 308 IPR001356 GO:0003677
Aip06g00541 398 Gene3D - 248 320 - -
Aip06g00541 398 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 243 309 - -
Aip06g00541 398 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 313 337 - -
Aip06g00541 398 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 357 398 IPR000387 GO:0016311|GO:0016791
Aip06g00541 398 Gene3D Protein tyrosine phosphatase superfamily 350 398 IPR029021 -
Aip06g00541 398 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 243 309 - -
Aip06g00541 398 SUPERFAMILY Homeodomain-like 254 309 IPR009057 -
Aip06g00541 398 Pfam Homeodomain 260 308 IPR001356 GO:0003677
Aip06g00541 398 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 313 337 - -
Aip06g00541 398 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 347 397 IPR029021 -
Aip06g00541 398 ProSiteProfiles 'Homeobox' domain profile. 257 307 IPR001356 GO:0003677
Aip06g00541 398 SMART HOX_1 259 321 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00541 Aip-Chr6 6967568 6970702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00541 243 336 Homeobox Transcription Factor Family AT4G03250 52.419 2.59e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip06g00541 DSPc 1e-06 CL0031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00541 - - aip:107645585 179.489