LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g00508	ATGGAGGACTTGACTTCATGGTGTACTTGCACCATGAAGGTGCTTTTCTTCTCCGAGGAAGCGGCAGCAAGTGTTGCTGTGACTGTGAGGATGAAAGAGAGGAGGGTGTGGCAAGGAGCCATTGGAGCAGCGGTGGAGATTGAGTGGAAAGTAATgTTCTGCAGAAGGCTCAACCACGGAAGAAACAAATTGGTTGGAAAAGCTGGTGGTGCTAGGTGGAAGTCCATGTTCTTTGCTAATGAGAGTGGAGATTCTAATAAGTCAAAATCTGTGGTAAATGACGATTATGATGATAAAGAGAGAATGAGGGAAGTAGCAGCTATGGTGAAGGAAGAGGCCTTGGACACCGCCACCAACCGAGGGTTCGAGATATGGCCTGATCATCATCAACCAAGCTACTACTCCTTCGGTTTGGGTCCATCTAGTGAGAGAAACACCACCACAAACCCAAGCGACGACGTTTCGGTGTCTTTCTCTGATGAGTCGAATCGGATCGGGTTCACCGTGATCTGGTCTTCTTCGTCTGGATCGAGTCTAGGAAGCGGCACAAATTGCAGAGACTGCGTTAACCAAGCCAAGAAAGACTGCCTCCACCTTCGCTGCCGAACCTGCTGCCGAAGCCGAGGGTTTCAATGTTCTACTCCAATTCAACACAATCAGAAGTAG	666	0.488	MEDLTSWCTCTMKVLFFSEEAAASVAVTVRMKERRVWQGAIGAAVEIEWKVMFCRRLNHGRNKLVGKAGGARWKSMFFANESGDSNKSKSVVNDDYDDKERMREVAAMVKEEALDTATNRGFEIWPDHHQPSYYSFGLGPSSERNTTTNPSDDVSVSFSDESNRIGFTVIWSSSSGSSLGSGTNCRDCVNQAKKDCLHLRCRTCCRSRGFQCSTPIQHNQK	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g00508	221	PANTHER	PROTEIN SHI RELATED SEQUENCE 7	81	216	-	-
	Aip06g00508	221	PANTHER	PROTEIN LATERAL ROOT PRIMORDIUM 1	81	216	IPR007818	GO:0003700\|GO:0006355
	Aip06g00508	221	Pfam	Domain of unknown function (DUF702)	182	217	-	-
	Aip06g00508	221	TIGRFAM	put_zinc_LRP1: putative zinc finger domain, LRP1 type	184	217	IPR006510	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g00508	Aip-Chr6	6341721	6345960	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g00508	80	217	C2H2 Transcription Factor Family	AT1G75520	31.210	3.36e-17	77.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SRS	Aip06g00508		DUF702	6.3e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g00508	-		-	gmx:100794846	127.872