Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00482 ATGTCTTCTACACTTGAGGAATCTCTAAGATCTCTATCGTTGGATTACCTCAACCTGCTCATCAACGGTCAGGCCTTCAGCGACGTCACCTTCAGCGTGGAGGGCCGTCTAGTACACGCGCACCGCTGTATCCTGGCGGCAAGAAGTCTATTCTTCAGGAAATTCTTCTGCGGGCCCGATCCTCCTTCGCCCTCTGGCCTGGATCCTCCAGGACAGAGGATGAACTCGGGGTCGGGCTGCAGAACCCCTACAGGGGTAATACCCGTGAACTCCGTGGGGTACGAGGTGTTCCTGCTCATGCTGCAGTTTCTGTACAGCGGGCAGGTATCCATCGTCCCCCAGAAGCACGAGCCACGGCCCAATTGCGGCGAGAGGGGCTGCTGGCACACGCATTGCTCCTCCGCCGTCGATCTTGCTCTAGACACACTCGCCGCCGCTAGATACTTCGGCGTTGAGCAGCTCGCATTGCTAACTCAGAAACAACTAGCGAGCATGGTGGAGAAAGCTTCCATTGAAGATGTGATGAAGGTCTTGGTAGCTTCAAGAAAGCAAGACATGCACCAACTGTGGACTACATGCTCCCACCTTGTAGCCAAGTCCGGTCTCCCACCGGAGGTTCTCGCCAAGCACCTCCCCATCGACATCGTCGCCAAAATCGAAGACCTCCGTCTAAAATCCTCCCTCGTCCGCCGTACCGCCGCCTTCCTCCCCCACCACCACCACCCGGACCTCTCGGCCGCGGCAGACCTCGAGGACCAAAAGATCCGCCGGATGAGACGAGCGCTCGACTCATCCGACGTGGAGCTCGTAAAGCTAATGGTAATGGGAGAAGGGCTCAATCTCGACGACGCATTGGCTTTGCATTACGCCGTCGAGAATTGTAGCCGCGAAGTGGTGAAAGCCCTGCTGGAACTCGGGGCAGCCGATGTCAACTACCCTGCAGGTCCAGCAGGAAAAACACCGCTTCATATCGCGGCGGAAATGGTTTCGCCCGATATGGTGGCGGTCCTGCTGGACCACCACGCTGACCCAAACGTCAGAACCATCGACAACGTGACGCCATTGGACACACTAAGAACCCTAACCTCTGATTTTCTGTTCAAAGGCGCAGTCCCTGGCCTGACTCACATTGAACCAAACAAATTAAGGCTGTGTTTGGAGCTTGTTCAATCGGCGGCACTTGTTTTGTCTCGTGAAGAAGGTAACGCCAATAACAACAATGTTGCTTCTTCTACAACGCAACATCATCATCATATTTATCCTCCTTCCATGAACGAAGATCATCATAGCAGTTCAAGCAGTGGCGGCAACAATAACAATAACACCAACGTTAACTTGGATTCCAGGTTGGTGTATCTTAACCTTGGTGCCACCTTAGGTGGTGGTGGTGGTGGCGGCGCCTCCGGTCAAATGAGTTCAAGGTTGGATGGTGATGATGATAACCGTCATGGTGAAGCAGCAATGTACCATCACCACCACCACCATCATCACCATTCTCATCATGACTTCTAG 1512 0.5403 MSSTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSPSGLDPPGQRMNSGSGCRTPTGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEDLRLKSSLVRRTAAFLPHHHHPDLSAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDDALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTIDNVTPLDTLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANNNNVASSTTQHHHHIYPPSMNEDHHSSSSSGGNNNNNTNVNLDSRLVYLNLGATLGGGGGGGASGQMSSRLDGDDDNRHGEAAMYHHHHHHHHHSHHDF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00482 503 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Aip06g00482 503 Pfam BTB/POZ domain 18 116 IPR000210 GO:0005515
Aip06g00482 503 ProSiteProfiles BTB domain profile. 27 113 IPR000210 GO:0005515
Aip06g00482 503 MobiDBLite consensus disorder prediction 461 484 - -
Aip06g00482 503 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Aip06g00482 503 CDD BTB_POZ_NPR_plant 10 166 - -
Aip06g00482 503 Gene3D Potassium Channel Kv1.1; Chain A 2 199 IPR011333 -
Aip06g00482 503 SUPERFAMILY Ankyrin repeat 276 359 IPR036770 -
Aip06g00482 503 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Aip06g00482 503 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 4 493 IPR044284 GO:0099402
Aip06g00482 503 SMART BTB_4 27 166 IPR000210 GO:0005515
Aip06g00482 503 Gene3D - 248 365 IPR036770 -
Aip06g00482 503 MobiDBLite consensus disorder prediction 404 443 - -
Aip06g00482 503 Pfam Domain of unknown function (DUF3420) 201 259 IPR024228 -
Aip06g00482 503 SMART ANK_2a 317 346 IPR002110 GO:0005515
Aip06g00482 503 SMART ANK_2a 282 312 IPR002110 GO:0005515
Aip06g00482 503 PANTHER REGULATORY PROTEIN NPR5 4 493 - -
Aip06g00482 503 SUPERFAMILY POZ domain 10 164 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00482 Aip-Chr6 5815692 5818462 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aip06g00482 BTB 2.9e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00482 K14508 - qsu:112012060 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00482 06 5815692 5818462 Aip02g01701 02 72890249 72895232 PCT