Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00467 ATGTCCATGATCCTTGCATTATCCTCTCCAACAAGTATGTTCCCTAATAACATGGAATGGCCCTTAGAGTTAGAAGAAGAAGAACTAAGTCATAGTCATGAATACTTCAACTCAGAAGAGTATCCATTACTCTCTTCTTCCATGGCCAAGAAATTTAATCACAATGCAAGCGAGCGCCACCGCCGCAAGAAGATCAATGCCTTGTACTCTTCTCTCCGGTCAATCCTCCCTGTTGCAGATCAAACGAAGAAGATGAGCATCCCAGCAACAATTTCAAGAGTGTTGAAATACATACCTGAGTTGCAACAACAGGTGGAAGAACTAATCAAGAAAAAGGAGGAGCTCTTGTTGAGAATTTCTCGGCAAGGGGATATTAATAACGATGATGCAGCAATGAACAAGAAAGGCCATCATCATCACAACTCTTCTGCCTTTCTGGTTTCATCAAGTAGGATCAGTGACAGTGAAGTTAGTATTCACATGATTTCTTCTTATGGAATTCAAAAGTGTCAAGTATCTGAAATCTTGGTGTGTTTAGAAAATCACTATGCCCTTCAACTGCTAAATGCTTCTTCCTTTGACACCTTTGGAGGAAGACTCTTCTACAACCTGCATTTTCAGATGGAAATGGCTCATACATTAGACACAGAAGTTCTAAGCGAGAAGATCTTGTCAATATGTGAGAAGCATCAAAGGATATAA 702 0.4003 MSMILALSSPTSMFPNNMEWPLELEEEELSHSHEYFNSEEYPLLSSSMAKKFNHNASERHRRKKINALYSSLRSILPVADQTKKMSIPATISRVLKYIPELQQQVEELIKKKEELLLRISRQGDINNDDAAMNKKGHHHHNSSAFLVSSSRISDSEVSIHMISSYGIQKCQVSEILVCLENHYALQLLNASSFDTFGGRLFYNLHFQMEMAHTLDTEVLSEKILSICEKHQRI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00467 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 101 IPR011598 GO:0046983
Aip06g00467 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 119 IPR036638 GO:0046983
Aip06g00467 233 Coils Coil 98 118 - -
Aip06g00467 233 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Aip06g00467 233 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 27 229 - -
Aip06g00467 233 CDD bHLH_AtORG2_like 50 122 - -
Aip06g00467 233 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 27 229 IPR015660 GO:0003700|GO:0006357
Aip06g00467 233 Gene3D - 44 127 IPR036638 GO:0046983
Aip06g00467 233 SMART finulus 55 107 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00467 48 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 47.283 2.27e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00467 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00467 - - gmx:100803424 196.052