Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00438 ATGGATCACAGAACAAAGTCGAAGGACTCGCTCAACTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTCAATTATTACGAAAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGTAGGTAGGGCTGTTGCAAATTACAGTAATGGGAATATGCGTGGTAAGGAGGTGAGTTCGGCGAAGAAGAGGAAGTGGTCTCAGAACGGGGACAATGAGGAAAGGAGCAAGCATATTCAGAAATACAAGAGGAGGTTTAATGATAACTCATCTAGCCCTGCTCAAAATCAGGTTGCTGCTCCTCTTCTCAAAAGTAGCGTGGGTTCAAAAGCTCACAAGTCAGGGAATGAACTCAGGAGAGGACTACATGCTGCAGAGACTACATCTGAGTGGATGAATGGTTCCAATTCTCAGAAAATGGGAAATTACCGTGATTCTGATCTCTTGAAGCAATATTGCCCCAATAGGATAATATATGAACCTGCTTTTTTGGATATTGGGGATGGTATCACTTACAAGATTCCTCCAAGATATGATAAGTTAGCTGCATTGCTCAACCTTCCTACCTTCTCAGAGATCCATGTTCAGGATTTCTACTTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGGATAGGCATGGGGGAAACCATACCCCACTATGAATCACTTCAGGCACGATTGAAGGTCATGTCAGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTATCAGACTTGAACTCCTCCATTCCAGAGGGGGCTGCTGGAAACATCAAGCGATCTATTCTGTCCGAGGGTGGTGTATTGCAGATTTACTATGTGAAGGTTTTGGAGAAAGGGGACACTTATGAGATCATTGAACGAAGCCTACCCAAGAAGCAAAAGGTAAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGAATTGGTAAGATTTGGGTGAACATTATTAGAAGAGATATACCCAAACATCAGAGGAACTTCACTGCTTTGCATCGAAAGCAGCTTGTTGATGCCAAGAGGTTTGCTGAGAACTGTCAGAGAGAGGCATGCCCTGTTAGGCTGAAAGTGAGTAGATCAATTAAATGGACGCGGACTGCTGGTATACGCACCCGAAAACTTGCTAGAGACATGTTGCTATTCTGGAAGCGAATAGATAAGGAGATGGCAGAAGTACGAAGACGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGTGAAGCAAAGCGGCAGCAGCAAAGGCTGAATTTTCTTATACAGCAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAGCTTAGTATCAGAAGCTTTACCCATGGGTGATGAAAGTACAAATGACCAAGATCTAATTGACTCTTCAACTTTTGGGCGTAATGAGGAGGAAGATCATGAAGAGGCTGAGTTGAAGAAGGAAGCTCTGAAGGCTGCTCAAGAAGCTGTTTCCAAACAGAGAAGATTGACAAGTGCTTTTGACACTGAGTGCTTGAGGCTGCGCCAGGCTGATGAAGCTGATTTACTCCAACCAGAAGTTGCTGGAGCAAGTAATATTGATTTACAAACCCCCTCAACCATGCCAGTGGCCTCCACAGTTCGGACACCAGAATTGTTTAAAGGTGTTCTCAAAGAGTATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGTCTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATCTAGCTGAGGAGAAAAACATATGGGGACCTTTCCTGGTTGTTGCACCTGCATCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTGAAAAGACTTCCTTATTGGGGTGGGGTTGCAGAGCGGTCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGCAGGGAAGCCAAATTTCATGTCCTCATCACAAGCTATCAGTTATTAGTTACTGATGAGAAGTTTTTTCGTCGTGTAAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATTAAAAGTTCTGCCAGTATAAGATGGAAGACGCTCCTAAGTTTTAATTGTCGGAATCGCTTACTGCTGACTGGTACACCTATTCAGAATAATATGGCGGAGTTGTGGTCTCTTTTGCATTTCATTATGCCAACATTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCTGAACATGGGGGTACTTTGAATGAGCACCAACTGAATAGATTGCATTCAATCCTAAAGCCGTTCATGCTGCGCCGTGTTAAAAAAGATGTAATCTCTGAGCTGACCACTAAAACTGAAGTTACAGTTCACTGCAAGTTGAGTTCTCGACAACAGGCTTTCTATCAAGCAATTAAAAACAAGATATCTCTTGCTGAACTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAGAATTTTGAATTTAATGAACATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAATTATTTGAAAGGAGCGAGGGAAGCACATACCTTCATTTTGGAGAGATTCCAAATTCTCTTCTACCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATTCTGGGGGTCACAACCCCATTTCATACGAGATACCAAAACTTGTGTATCGAGAAATTATGCAGAGTTCTGAGACTCTTGGTTCAGCTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCTGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATCGATCTGTTTTCCCGGAAGGTATGTGTGTTAGCAGTGGAGGCTTTGGTTTTACCCATATGACGGATTTGTCTCCACAAGAGGTGGCATTTTTGGCTAATGGTTCTTTTATGGAGCGATTGTTATTTTCTATGATGAGATCGGATAAAAAATTCATCGATGAAGTTGTAGATTTTCTTGTTGAGACCATAGATGATGATGATCCAGAATGTAGTAATCTTGAGAAAGGGAAAGTGAGAGCTGTTACTCGAATGTTATTGGTGCCATCAAAATCTGAAACTCAGTTTCTTCAAAGAAGATTTCCAACCGGGCCCAGCCATGCTCCTTTTGAGGCCTTGGTAGTCTCAGATCAGGATAGACTTTTGTCAAATGCAAGGCTGCTTCACTCGGCATACACATATATCCCACGGAGTAGAGCTCCCCCAGTTGGTGTTCACTGCTCTGATAGAAACTTTTACTATAAAATGATTGAACAATTCCACAATCCTTGGATTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGAATGTAACGGGCCGAGAATGCCAGATTGTCATCATTTAATTGAAGAAATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTACAGTTAACACACAGTATTTTTGGGTCGTCTCCACCTATGTGGAATTTTGACCCAGCAAAGTTGTTGACTGACTCTGGGAAGCTTCAAACGCTTGATATATTATTGAGACGCTTAAGAGCTGAAAATCATCGTGTTCTTTTGTTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAGGTATTTCAGACTTGATGGATCATCTACTATACAAGATCGTAGAGACATGGTCAGAGACTTCCAGAATAGGCCTGATATTTTTGTGTTCTTGTTGAGTACAAGAGCTGGTGGACTTGGCATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTAGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACTGTTTACCGACTTATATGCAAAGAGACAGTTGAAGAAAAAATTCTTCATAGAGCAAGCCAGAAAAGTACTGTACAAAACCTTGTAATGACTGGGGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTTTCTTTGCTTCTAGATGATCCCCAGTTGGAGCAGAAATTAAAGGAAATTCCCCTCCAGGCAAAGGATAAGCAAAAGAAAAAACAACCTGCAAGGGGCATTTTCTTAAATGAAGAAGGTGATGCATCTCTTCAAGATTTAACCAACGCTGTACCCCAGGGTACTGTGGATAATGATCTTACTGTGGACACAGAGGGTTCGAAGTCTGCTAATAAAAAGAGAAAAGCTGCCTCGGATAAGCAAACTTCAAGGCTGAAGAGTTCTCAGAAGATAAGTGATGTCGGTATGTCAGCCATGGACGACGAATTGGATGACCTGAACACTGATCCAGTTGGCCAGAAGCCCAAGAGACCAAAAAGGTTAAAGAAGAGTATTAATGAGAGGTTCGAAGAGGCTTCTATTGGCACGGCCACTGCCGTCACAGAGCAGACCCAATATCCACCTCCACAGGATTTCACATCCATCGTTCCTAGAGCGGAAACGAGCCTAGACCCCTAA 4548 0.4211 MDHRTKSKDSLNYSTLFNLESLMNFQLPEQDDDFNYYENSSQDESRDSQVGRAVANYSNGNMRGKEVSSAKKRKWSQNGDNEERSKHIQKYKRRFNDNSSSPAQNQVAAPLLKSSVGSKAHKSGNELRRGLHAAETTSEWMNGSNSQKMGNYRDSDLLKQYCPNRIIYEPAFLDIGDGITYKIPPRYDKLAALLNLPTFSEIHVQDFYLKGTLDLGSLAEMMAADKRFGNRNRIGMGETIPHYESLQARLKVMSASNSPHKFSLKVSDLNSSIPEGAAGNIKRSILSEGGVLQIYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERIGKIWVNIIRRDIPKHQRNFTALHRKQLVDAKRFAENCQREACPVRLKVSRSIKWTRTAGIRTRKLARDMLLFWKRIDKEMAEVRRREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLVSEALPMGDESTNDQDLIDSSTFGRNEEEDHEEAELKKEALKAAQEAVSKQRRLTSAFDTECLRLRQADEADLLQPEVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRREAKFHVLITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSSASIRWKTLLSFNCRNRLLLTGTPIQNNMAELWSLLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLHFGEIPNSLLPPPFGELEDVYYSGGHNPISYEIPKLVYREIMQSSETLGSAVGHGVCRESFLKHFNIFRPENVYRSVFPEGMCVSSGGFGFTHMTDLSPQEVAFLANGSFMERLLFSMMRSDKKFIDEVVDFLVETIDDDDPECSNLEKGKVRAVTRMLLVPSKSETQFLQRRFPTGPSHAPFEALVVSDQDRLLSNARLLHSAYTYIPRSRAPPVGVHCSDRNFYYKMIEQFHNPWIKRLFVGFARTSECNGPRMPDCHHLIEEIDSELPVSQPALQLTHSIFGSSPPMWNFDPAKLLTDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQNRPDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDPQLEQKLKEIPLQAKDKQKKKQPARGIFLNEEGDASLQDLTNAVPQGTVDNDLTVDTEGSKSANKKRKAASDKQTSRLKSSQKISDVGMSAMDDELDDLNTDPVGQKPKRPKRLKKSINERFEEASIGTATAVTEQTQYPPPQDFTSIVPRAETSLDP 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00438 1515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1191 1341 IPR001650 -
Aip06g00438 1515 Gene3D - 569 810 IPR038718 -
Aip06g00438 1515 MobiDBLite consensus disorder prediction 66 86 - -
Aip06g00438 1515 Pfam Helicase conserved C-terminal domain 1191 1300 IPR001650 -
Aip06g00438 1515 Pfam SNF2-related domain 588 875 IPR000330 GO:0005524|GO:0140658
Aip06g00438 1515 Pfam DNA-binding domain 332 463 IPR020838 GO:0003677
Aip06g00438 1515 Coils Coil 412 451 - -
Aip06g00438 1515 Coils Coil 489 516 - -
Aip06g00438 1515 MobiDBLite consensus disorder prediction 1486 1507 - -
Aip06g00438 1515 Gene3D - 811 881 IPR027417 -
Aip06g00438 1515 ProSiteProfiles DBINO domain profile. 337 465 IPR020838 GO:0003677
Aip06g00438 1515 SMART ultradead3 569 764 IPR014001 -
Aip06g00438 1515 PANTHER HELICASE SRCAP-RELATED 16 1476 - -
Aip06g00438 1515 MobiDBLite consensus disorder prediction 115 147 - -
Aip06g00438 1515 MobiDBLite consensus disorder prediction 1400 1515 - -
Aip06g00438 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 803 1368 IPR027417 -
Aip06g00438 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 801 IPR027417 -
Aip06g00438 1515 Gene3D - 1160 1400 IPR027417 -
Aip06g00438 1515 CDD SF2_C_SNF 1179 1311 - -
Aip06g00438 1515 SMART helicmild6 1217 1300 IPR001650 -
Aip06g00438 1515 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1476 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Aip06g00438 1515 MobiDBLite consensus disorder prediction 1416 1431 - -
Aip06g00438 1515 MobiDBLite consensus disorder prediction 1400 1415 - -
Aip06g00438 1515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 585 756 IPR014001 -
Aip06g00438 1515 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00438 Aip-Chr6 5113041 5123415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00438 626 874 RAD5 or RAD16-like Gene Family AT1G61140 23.871 2.43e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip06g00438 SNF2_N 3.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00438 K11665 - gmx:100780615 2437.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00438 06 5113041 5123415 Aip06g00438 06 5113041 5123415 ECH