Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00412 ATGGCTTCGTCTTCCTCTGATCCCGGCAAGTCAGATGCCGGAGGCGGCGCTGCGGACACGTCGGAGGCGGTGGTGGCAGCTGCCAACGATCAGCTTCTGCTGTACAGGGGACTCAAGAAGGCGAAGAAGGAGAGAGGCTGCACCGCCAAAGAGCGTATCAGTAAGATGCCACCGTGCGCCGCCGGCAAACGCAGTTCCATATACCGCGGCGTTACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAGAGTACGTGGAACCAGAATCAGAATAAGAAAGGGAAGCAAGTTTACTTGGGAGCTTATGATGATGAGGAGGCAGCAGCTAGAGCATATGATCTTGCTGCTTTGAAATACTGGGGTCCAGGAACGCTTATTAACTTCCCAGTGACTGATTATACAAGAGATCTTGATGAAATGCAAAATGTTTCCAGGGAGGAATACCTTGCGTCTTTGCGTCGGAAGAGCAGTGGTTTTTCAAGAGGAATATCAAAATACCGTGCCCTCTCCAGTCGATGGGAGCCGTATGGTCGTATAGCAGGATCAGATTACTTCAATAGCATGCAGTATGGTGATGATTCAGCAGCAGAAAGTGACTACATGAGTGGTTTTTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGCATCTAACAAAAATCGACAACCTGATAGTGGGACAAGATTATCAGAAGAAAAGAAACACGGATTTGCTGGAGATGTTTGTAGTGAACTTAAGACACTGGAGCAGAAAGTGCAACCTACTGAGCCATACCAAATGCCAAAGTTAGGTCAGCCTCACAATGAGAAAAAACATAAAAGTTCTTCAGGATCTGCCTTAAGTATTTTGTCACAATCCGCTGCTTACAAGAGTTTGCAAGAGAAAGCAGCAAAGAGACAGGAGAATAGTACAGAAAATGATGAGAATGAAAACAAGAATATAGTCAATAAGTTGGATCATGGCAAAGCAGTTGAGAAATCATCAAATCATGAGGATGGAAATGACCGACTTGACATTGCAATGGGAATGAGCGGAGCTTTGTCACTTCAAAGAAACGTTTACCCGTTGACTCCATTCTTGTCTGCCCCACTCTTGACGGCCTACAACTCTGTGGATCCATTGGGAGATCCCGTTCTCTGGACATCTATTGTTCCCATACTTCCAGCTGGCATGATTTCTCGTACAGCTGAGGTTACCAAGACTGAGACTAGTTCAACATACACTATGTTTCAGCCAGAGGAATGA 1269 0.4555 MASSSSDPGKSDAGGGAADTSEAVVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLDEMQNVSREEYLASLRRKSSGFSRGISKYRALSSRWEPYGRIAGSDYFNSMQYGDDSAAESDYMSGFCIERKIDLTSHIKWWASNKNRQPDSGTRLSEEKKHGFAGDVCSELKTLEQKVQPTEPYQMPKLGQPHNEKKHKSSSGSALSILSQSAAYKSLQEKAAKRQENSTENDENENKNIVNKLDHGKAVEKSSNHEDGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNSVDPLGDPVLWTSIVPILPAGMISRTAEVTKTETSSTYTMFQPEE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00412 422 PANTHER BNAA03G19580D PROTEIN 2 421 - -
Aip06g00412 422 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 421 - -
Aip06g00412 422 MobiDBLite consensus disorder prediction 1 20 - -
Aip06g00412 422 MobiDBLite consensus disorder prediction 259 287 - -
Aip06g00412 422 Pfam AP2 domain 67 125 IPR001471 GO:0003700|GO:0006355
Aip06g00412 422 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Aip06g00412 422 Gene3D AP2/ERF domain 67 135 IPR036955 GO:0003700|GO:0006355
Aip06g00412 422 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Aip06g00412 422 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Aip06g00412 422 SUPERFAMILY DNA-binding domain 66 134 IPR016177 GO:0003677
Aip06g00412 422 MobiDBLite consensus disorder prediction 302 344 - -
Aip06g00412 422 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Aip06g00412 422 MobiDBLite consensus disorder prediction 299 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00412 Aip-Chr6 4850379 4853945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00412 25 420 AP2-EREBP Transcription Factor Family AT2G41710 63.990 1.88e-163 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g00412 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00412 K09285 - gmx:100814117 706.057