Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00378 ATGTGCAAAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTAAAAATGAGAAGAAAGATTCGGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCTAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAACAACAATATCCACTGAAGCCTGATGTTGAAGATTATGCTTTCTATCTTAAAACTGGAACTTGCGAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAATCAGAGCATCAATGGAATCTCCGTTAAATCATAA 408 0.4069 MCKEFHKKLDLKDEDERVAKNEKKDSDFVAGSGEYGGEELGGEGGCAPKTGEAQGSDDNDGWDDDEVEVEGDEEVEKKKDRSSGRVQQQYPLKPDVEDYAFYLKTGTCEFGFNCKFNHPLGRRKNQSINGISVKS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00378 135 Gene3D - 65 127 - -
Aip06g00378 135 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Aip06g00378 135 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 4 129 - -
Aip06g00378 135 MobiDBLite consensus disorder prediction 57 71 - -
Aip06g00378 135 MobiDBLite consensus disorder prediction 1 91 - -
Aip06g00378 135 PANTHER PROTEIN PHOSPHATASE RELATED 4 129 - -
Aip06g00378 135 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 119 IPR000571 GO:0046872
Aip06g00378 135 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00378 Aip-Chr6 4455387 4456211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00378 90 122 C2H2 Transcription Factor Family AT1G29570 48.485 1.51e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip06g00378 zf-CCCH 2.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00378 - - adu:110280340 172.555