Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00363 ATGGATACTACCAAGAAATCCCCCTTGAAGCCATGGAAGAAGGGTCCAACAAGAGGGAAAGGCGGCCCCCAGAACGCTTCGTGTGAGTATCGAGGTGTTCGCCAAAGGACTTGGGGGAAATGGGTTGCAGAGATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACGGCCGAAGAAGCTGCCATGGCTTACGACGAGGCTGCGCGGAGGCTCTATGGACCGGATGCGTATCTTAACCTTCCCCACCTGAAACCGAGCTCCAACTTTCCCATCAAATCTGGGAAATTCAAATGGATGCCATCCAAGAACTTCATTTCAATGTTCCCTTCTTGTGGACTACTCAATGTGAATGCTCAACCTAGTGTTCATCTAATCCATCAGAGGCTTCAGCAGTTTAAGCAGAATGGGGTTGTGAATCAATCTCCTAGTTCATCCAATGATCCAAAGGGTGAAACTCAGAGTGTAAAAGAAAGCAAAGTTGATGCAGAAGAAGATCCTCCAGAGGAGAAAAACACTCGAGCATCATCAGAGGCGATGCTTGGAGATCTTCACGAGAAGCCACAGATAGACCTTCATGAGTTTCTTCAGCAGATGGGTATACTGAAAGCAGAAATACAGGAAGAAAGAACCGATAGTTCGGGGAGTTCGACAGTGCCTGAAGCTGCATCGTGCGATGACTATGCTCAACTAGGCCTGTTTTCTGACAACAGTGTTAACTGGGAGGAACTGATTGGCATGCATGGAATTGCAGATTTTCCAGAAGCTGAATCCACCCAGTTGGAAGCACATGAAACAAATTATGAGCTCGATTTCTATTCTTCCATCTGGAACTTCTAA 852 0.4707 MDTTKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLKPSSNFPIKSGKFKWMPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQQFKQNGVVNQSPSSSNDPKGETQSVKESKVDAEEDPPEEKNTRASSEAMLGDLHEKPQIDLHEFLQQMGILKAEIQEERTDSSGSSTVPEAASCDDYAQLGLFSDNSVNWEELIGMHGIADFPEAESTQLEAHETNYELDFYSSIWNF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00363 283 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Aip06g00363 283 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Aip06g00363 283 MobiDBLite consensus disorder prediction 141 180 - -
Aip06g00363 283 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Aip06g00363 283 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Aip06g00363 283 MobiDBLite consensus disorder prediction 141 156 - -
Aip06g00363 283 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Aip06g00363 283 MobiDBLite consensus disorder prediction 157 177 - -
Aip06g00363 283 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Aip06g00363 283 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Aip06g00363 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 279 - -
Aip06g00363 283 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Aip06g00363 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 279 - -
Aip06g00363 283 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00363 Aip-Chr6 4251320 4252505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00363 5 283 AP2-EREBP Transcription Factor Family AT3G57600 49.477 3.78e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip06g00363 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00363 - - gmx:100801311 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00363 06 4251320 4252505 Aip06g00363 06 4251320 4252505 ECH