Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00362 ATGGAGAAAGGAGCGACTAAGAAGAAATCATCACCTCTCTCTCTGCAACAGTTCATCACTATCACCACCCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCGCCACAGGCGCATCAAGGAATTTGGATACTGCTCAAAAGAGAGGTTCCACAATCCTTAACTTGAAGTGTGTGGATGTCCAGACAGGGCTTATGGGAAAATCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCACGACGTCGTCGTTTTAAAACTCAACAAGGCTGATGTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTATAGATTAAAGGACTCATCAATAACTGTTGCTTTTGATGACATACCTGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCAGCTGCTGATCTAATTCCGGTCTTATTTGGGGAGAGGTCGCCAACAATGTCCAAGAAGGATGTTTCCTTCACTCCTTTTAATACCAAACTTGATCACTCTCAGAAAGGTGCAATTTCAAAAGCCCTATCTTCGAAGAATGTGTTTTTGCTACATGGACCTCCTGGAACTGGGAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTTAAACGTGGATCAAAGATTCTTGCTTGTGCTGCCTCAAACATTGCTGTTGATAACATTGTTGAGCGGCTAGTTCCACATAGGGTGAGAGTAGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGCCTTGCAAATGACATTCGAAAAGAAATGAAGGCATTGAATGGAAAGCTATTGAAAACCAAAGACAAAAGTACAAGGAGAGACATACAAAGGGAACTTAGGACTCTATCCAAGGAAGAGCGCAAAAGGCAGCAGCTTGCTGTAACAGACGTACTTAAAACTGCAGATGTAATATTGACTACTCTGATTGGGGCCTATTCTAAGAAACTCGACAATATGTCATTTGATTTGGTAATTATTGATGAAGCTGCTCAAGCACTTGAAATTGCATGTTGGATTCCTCTGTTGAAGGGCTCAAGATGTATCCTCGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGTTTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATATATGGAGACGAGGTCACATCTATGCTTACAGTCCAGTACCGTATGAATGAACTCATCATGGATTGGTCTTCTAAAGAACTTTACAACAGCAAGATCGAGGCTCATGCTAGTGTTGCTGCACATACGCTACATGATCTTGACAATGTGAAGAAGACATCATCAACTGAACCAACTCTTCTTCTCATAGACATTGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACTCTTAATGAAGGTGAAGCTGAGGTTGCTATCGTTCATGCCAAGAGACTCGTTCAAAGTGGTGTGCCTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAGAAACAATGAGAATCAGCTGAAGGATGTCGAAATCTCAACAGTTGATGGGTTTCAGGGAAGGGAGAAGGAAGCCATTATTATATCCATGGTCCGATCCAACTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGTATGAATGTGGCTGTGACACGGGCACGAAGGCAATGCTGTCTTGTCTGCGACACCGAGACAGTCAGTAGTGATGCATTTCTGAAGCGGTTGATAGAGTATTTTGAAGAGCATGGCGAAACTATTGGTTGTTTTGATGATGTTGCTAGTAGATCTATGAAGGTTTTCTCAATCCAAGTCATGGAGTGTAAGACAAAAGCAAGGGTTAACATGAATTGTCAAAAAGCTGCTAATTAA 2019 0.4235 MEKGATKKKSSPLSLQQFITITTPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADVGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPAADLIPVLFGERSPTMSKKDVSFTPFNTKLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDKSTRRDIQRELRTLSKEERKRQQLAVTDVLKTADVILTTLIGAYSKKLDNMSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEIYGDEVTSMLTVQYRMNELIMDWSSKELYNSKIEAHASVAAHTLHDLDNVKKTSSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAIVHAKRLVQSGVPPSDIGIITPYAAQVVLLKMLRNNENQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDAFLKRLIEYFEEHGETIGCFDDVASRSMKVFSIQVMECKTKARVNMNCQKAAN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00362 672 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 8 633 - -
Aip06g00362 672 Coils Coil 295 315 - -
Aip06g00362 672 Pfam AAA domain 196 408 IPR041677 GO:0004386
Aip06g00362 672 Pfam AAA domain 417 613 IPR041679 -
Aip06g00362 672 Gene3D - 41 143 - -
Aip06g00362 672 SMART ultradead3 193 441 IPR014001 -
Aip06g00362 672 SMART AAA_5 211 460 IPR003593 -
Aip06g00362 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 621 IPR027417 -
Aip06g00362 672 CDD SF1_C_Upf1 442 630 IPR041679 -
Aip06g00362 672 Gene3D - 440 643 IPR027417 -
Aip06g00362 672 CDD DEXXQc_SMUBP2 196 441 - -
Aip06g00362 672 PANTHER HELICASE WITH ZINC FINGER 2 8 633 - -
Aip06g00362 672 TIGRFAM TIGR00376: putative DNA helicase 342 635 IPR004483 GO:0003677|GO:0005524
Aip06g00362 672 Gene3D - 23 424 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00362 Aip-Chr6 4245355 4250930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00362 170 377 Core DNA Replication Machinery Family AT1G08840 27.488 7.17e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00362 K19036 - gmx:100810545 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00362 06 4245355 4250930 Aip06g00362 06 4245355 4250930 ECH