Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00359 ATGGATTTCGACGAAGAAGACGACGCCGACCCTGACGATGCTGATGCTGATGCGGATGCTGCTGATGCTACTACTGTGACGGTTGCACTGCACATAGGGCTTCCTAGCCCTAGCGCTGCGGAGATGGCATCCGTGCTCTCCGAGAAGGAGCACGGCGGAGGAGGCGAGGATTCCGGAGGCGGTGGTTCGACGGGGAACAAGGTGAACAAGGGACAGTACTGGATCCCAACCCCATCTCAGATTCTGATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATATAGAAAAGGACCAGAATCTCTAAGGGGAACTCAACCAACAGGGATGTTAAGGTTACCATGCTATTGTTGTGCACCAGGGTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTGCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGCTCTGGCCATGCAGCTTATGGCATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 750 0.4853 MDFDEEDDADPDDADADADAADATTVTVALHIGLPSPSAAEMASVLSEKEHGGGGEDSGGGGSTGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDDPASEVEQDHESTQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00359 249 MobiDBLite consensus disorder prediction 230 249 - -
Aip06g00359 249 SMART c2h2final6 88 110 IPR013087 -
Aip06g00359 249 SMART c2h2final6 172 192 IPR013087 -
Aip06g00359 249 Gene3D Classic Zinc Finger 134 225 - -
Aip06g00359 249 Gene3D Classic Zinc Finger 87 110 - -
Aip06g00359 249 MobiDBLite consensus disorder prediction 1 19 - -
Aip06g00359 249 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Aip06g00359 249 SUPERFAMILY beta-beta-alpha zinc fingers 153 192 IPR036236 -
Aip06g00359 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 192 IPR013087 -
Aip06g00359 249 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 7 248 - -
Aip06g00359 249 MobiDBLite consensus disorder prediction 1 22 - -
Aip06g00359 249 MobiDBLite consensus disorder prediction 39 71 - -
Aip06g00359 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Aip06g00359 249 PANTHER ZINC FINGER PROTEIN WIP2 7 248 IPR043584 GO:0003700|GO:0010468
Aip06g00359 249 SUPERFAMILY beta-beta-alpha zinc fingers 84 110 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00359 Aip-Chr6 4208694 4210421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00359 26 249 C2H2 Transcription Factor Family AT3G57670 78.077 2.51e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g00359 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00359 - - jre:108986074 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00359 06 4208694 4210421 Aip06g00359 06 4208694 4210421 ECH
Aip06g00359 06 4208694 4210421 Aip08g00361 08 2767712 2769411 ECH
Aip06g00359 06 4208694 4210421 Aip03g00589 03 5735689 5737703 ECH
Aip06g00359 06 4208694 4210421 Aip02g01788 02 78051139 78058772 PCT