Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00351 ATGGAGCAAGCCACAGGAGTGCTGCGTGGATCCACTCACGACGACGTCGTATTAGAGTCAATTCAATTCAACGAAGAAATCCGGGGAATCATGGCGCCCGCGCCCGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTCGAGCTACCGCCGACGCAGGCCGTTGAGCTCCTCCATTCTCCTGATTGCCCGGCCGCTGCTCGGGAACCGCCGTGCCATGTTAGCACCAACCAAAAACCCTACCTTCTTTGCTCCTACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATAGAACGCGCCGCCAAGTTCTCCGTCTTCGCTGGCGAGAACTCGCCGCCGGAGGATGCGGCGCGCCTGGCTCCAGTAGCTGTATCCGGCGTGGTGAAGAATGAGCCGCAGGAAACCGACTCGAACCCCAGCTCCACGCAGGGTTGCGTTTCGGATCCCGCTGTTGATACCAAGAATCAGAAGACCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTAACGCTAATTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAACGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCCTTGGTTCTGGATGAAATTATCAACCACGTGCAATCTCTACAGCGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCTGTTAATCCAAGAATTGATTTCAGCCTGGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTTCACCTGTTATGTGGCCAGAAAACCTAGCCAATGGTAACAGACAGCATTTTCAACAACAGTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCATGACTCCAGAACACTCACTTCTGAGTTATGACTCGTCTGCTAATTCAGCATCTCTGCAGTCAAATCAATTGAAGATGGAGCTCTGA 1014 0.5256 MEQATGVLRGSTHDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCPAAAREPPCHVSTNQKPYLLCSYGGNLTFPSNAALIERAAKFSVFAGENSPPEDAARLAPVAVSGVVKNEPQETDSNPSSTQGCVSDPAVDTKNQKTAKRKEREKKVTLIRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMASPVMWPENLANGNRQHFQQQWQFDAFHQPLWGREEANHNFMTPEHSLLSYDSSANSASLQSNQLKMEL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00351 337 Gene3D - 174 246 IPR036638 GO:0046983
Aip06g00351 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 246 IPR036638 GO:0046983
Aip06g00351 337 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Aip06g00351 337 SMART finulus 183 233 IPR011598 GO:0046983
Aip06g00351 337 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 171 - -
Aip06g00351 337 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 173 337 - -
Aip06g00351 337 MobiDBLite consensus disorder prediction 132 168 - -
Aip06g00351 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Aip06g00351 337 Coils Coil 217 237 - -
Aip06g00351 337 CDD bHLH_AtBPE_like 174 252 - -
Aip06g00351 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 173 337 IPR024097 GO:0006355
Aip06g00351 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 171 IPR024097 GO:0006355
Aip06g00351 337 MobiDBLite consensus disorder prediction 132 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00351 Aip-Chr6 4100126 4104581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00351 10 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.215 1.26e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00351 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00351 - - gmx:100814124 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00351 06 4100126 4104581 Aip06g00351 06 4100126 4104581 ECH
Aip06g00351 06 4100126 4104581 Aip02g01807 02 78911037 78916004 PCT