Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00343 ATGACGAAAGGTGTTGGAAACTACAGTGGCAGTGATGAACTTAGTCTATCCACAATGAACAGATTCAATAACCAAATTAGCTTCTCATCATCAAGAAGCCCTTCTTCTTCAGCAACGGCAACTAATAATAATAACCGTAATGGTGGATTATTCTTCCCTAATTATGGTTCTTGGAATGAGACATCATACAAGAGGGACGACCAAAATAGGATTCATAAGTTAATTTTTTATGCTAATCAGAATGAAGAGTTTGGGAATAATAAAGTTGTTCATACACTATCGCATCAACTAAGTTTTCCAAAAGCGGAATCGGAGATGTTTGCAATGGAGAATATGATTCACTTCCCATTATCAGATTCTGTTCCATGTAAAATTAGAGCCAAAAGAGGATGTGCTACTCATCCCAGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATCAGTGAACGAATGAAATTATTAGAAGAGCTTGTTCCGAACATGGACAAGCAAGCCAGCACAGCAGACATGTTGGACATGGCTGTAGGATACATAAAAGATCTTCAGAAACAATTTAAGAATCTAAGTGACAAACGGGCTAAATGCAAGTGTATAAGGATGCAGAAATCAGATTCTTCAAAAAAATTTTGA 630 0.373 MTKGVGNYSGSDELSLSTMNRFNNQISFSSSRSPSSSATATNNNNRNGGLFFPNYGSWNETSYKRDDQNRIHKLIFYANQNEEFGNNKVVHTLSHQLSFPKAESEMFAMENMIHFPLSDSVPCKIRAKRGCATHPRSIAERVRRTRISERMKLLEELVPNMDKQASTADMLDMAVGYIKDLQKQFKNLSDKRAKCKCIRMQKSDSSKKF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00343 209 SMART finulus 137 187 IPR011598 GO:0046983
Aip06g00343 209 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 201 - -
Aip06g00343 209 MobiDBLite consensus disorder prediction 27 46 - -
Aip06g00343 209 Pfam Helix-loop-helix DNA-binding domain 136 182 IPR011598 GO:0046983
Aip06g00343 209 Gene3D - 132 204 IPR036638 GO:0046983
Aip06g00343 209 PANTHER TRANSCRIPTION FACTOR BHLH130 14 201 - -
Aip06g00343 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 181 IPR011598 GO:0046983
Aip06g00343 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 197 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00343 Aip-Chr6 3987675 3990453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00343 52 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 56.250 5.42e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00343 HLH 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00343 - - aip:107647919 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00343 06 3987675 3990453 Aip06g00343 06 3987675 3990453 ECH
Aip06g00343 06 3987675 3990453 Aip08g00350 08 2631299 2634233 ECH
Aip06g00343 06 3987675 3990453 Aip03g00601 03 5874642 5885310 ECH
Aip06g00343 06 3987675 3990453 Aip02g01815 02 79335277 79338427 PCT