Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00333 ATGAGAACAATAAGGATAAAGTGTATAAGAAGAAAAAAAGAAATAGAATTACGTGATCCAGAGGCGTTTCAACTCAAGATTATTTTTGGTGAGAACGAAGCAGCAAGGCACAGAAAAGATTGCAACTGTAGGAAGTCAAAGTACAAGAACAAGCATTGCGCTTGCTTTAGTGCTGGATTTGGTTGCTCTAATCCGTGTAAATGTGACGGTTGCATGAATGAGTATGGAATCGTCAATCCCCAACAAGAACAACATGTTTTGACTAAAGATAATAATAATGGCGGCAACAACATTATGATGGATAATGGATCATCTCAATTTCAACATCTATTTACCGATAATGATTACTTCTTACAGTATATGCAGGTTTCTGAATCAGATGTGGATATGTTTCTTAATGAGGTAGAGCAGCCAGATTATTATGGTCAACAAATGTTACTGAGCAGTGACGGCGAGAATGGAATCAACAATAACATATAA 480 0.3625 MRTIRIKCIRRKKEIELRDPEAFQLKIIFGENEAARHRKDCNCRKSKYKNKHCACFSAGFGCSNPCKCDGCMNEYGIVNPQQEQHVLTKDNNNGGNNIMMDNGSSQFQHLFTDNDYFLQYMQVSESDVDMFLNEVEQPDYYGQQMLLSSDGENGINNNI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00333 159 SMART CXC_2 36 77 IPR033467 -
Aip06g00333 159 ProSiteProfiles CRC domain profile. 1 76 IPR005172 -
Aip06g00333 159 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 9 105 - -
Aip06g00333 159 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 39 74 IPR005172 -
Aip06g00333 159 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 9 105 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00333 Aip-Chr6 3881778 3882257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00333 12 76 CPP Transcription Factor Family AT3G22760 41.026 5.94e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip06g00333 TCR 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00333 - K21776 ahf:112771246 218.779