Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00324 ATGGCTCCGGGGGGAAGAACTGCCACCAATAACCATAAGAACCAACCACCTTCCTCCACAGTTGAGTCTCTAAACGGCTTGAAATTCGGCCAAAAAATATATTTTGAGGATTTGGGTCTCTCCACACCGTCAATCACTTCTTCAACTTCATCTTCTTCTTCTGCTGTTGAGGGTTGCAAAGCAGATCTGAGTGATGCTAAGGCTTACTATTCAAGGCACAAAGTTTGTGCCATGCACTCCAAATCCCCCACTGTCACTGTTTCTGGGCTCCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGGAAACGAAGTTGCCGCAGGCGGCTTGCCGGCCATAACGAACGTCGGAGAAAGCCCCCACCATCCAGCAACTTCTTAACCTCTCGTTATGCAAGACTTTCTTCATCACTTTTTGATGATAGTGGCAAAGGTGGAAGCTTCGTGATGGAATTCGCTTCATACCCGAAGCTGGGTCTTAGAAACACAGTTCCAAATCCCAGATCATCTCAACCAATTTCCGGAACACTAAGCTGGCAGGGCTATTCAGAGACATCATCTGACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCATCCCCAATGTCAGACACCCTCCTCCTTCGAGCGAAAGTTATGCCGGCGTAGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGCCAAACATGGGGATCTAGTAACATGGCACCAAGTCTCGGGTTGAATAACATGTTGAATTTCAGTGGTGCACCTGTGACACAACTTGCTGCATCATCCCATGGTGAATCCATTCATCAAGTTCCGAATCCCTGGTGGTGTCCAAACAAGGTTGTCCCTGATCTAGGCCTCGGTCAATTCTCGCAGCTTCCTAATAGCCAAGTTCCCGGCGAGTTCGATGCACTGGAACCAGGTAGGAGGCATCATGGGAATCTAGAGTAG 966 0.4824 MAPGGRTATNNHKNQPPSSTVESLNGLKFGQKIYFEDLGLSTPSITSSTSSSSSAVEGCKADLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSNFLTSRYARLSSSLFDDSGKGGSFVMEFASYPKLGLRNTVPNPRSSQPISGTLSWQGYSETSSDLFLQGSVGGTSIPNVRHPPPSSESYAGVADSSCALSLLSSQTWGSSNMAPSLGLNNMLNFSGAPVTQLAASSHGESIHQVPNPWWCPNKVVPDLGLGQFSQLPNSQVPGEFDALEPGRRHHGNLE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00324 321 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 319 IPR044817 GO:0003677
Aip06g00324 321 MobiDBLite consensus disorder prediction 302 321 - -
Aip06g00324 321 SUPERFAMILY SBT domain 55 132 IPR036893 GO:0003677|GO:0005634
Aip06g00324 321 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 11 52 - -
Aip06g00324 321 Pfam SBP domain 56 127 IPR004333 GO:0003677
Aip06g00324 321 ProSiteProfiles Zinc finger SBP-type profile. 51 128 IPR004333 GO:0003677
Aip06g00324 321 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 53 319 - -
Aip06g00324 321 Gene3D - 45 115 IPR036893 GO:0003677|GO:0005634
Aip06g00324 321 MobiDBLite consensus disorder prediction 7 23 - -
Aip06g00324 321 MobiDBLite consensus disorder prediction 1 23 - -
Aip06g00324 321 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 52 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00324 Aip-Chr6 3760426 3763364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00324 27 308 SBP-box Gene Family AT2G42200 41.692 2.82e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip06g00324 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00324 - - ahf:112696101 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00324 06 3760426 3763364 Aip06g00324 06 3760426 3763364 ECH