Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00323 ATGCAAACCCAGATCCAGGCGGCCATAGCTCGGTCGCGGCTGAGGAAGCAGCATTTCCACCGTCGAGTCTCTCCGTCTCGAGCATTGCCGCGCCGTCCTCTTCTCCAGCCCCCCCTTCGTGGTGTTAAAGTTTCCATCTATGACCAGAATGTAGTAAGACCTTGGGGAGCTTCGCCGCAGAAAACACAAAATTTGGTATTGGGCTTAGGTTCATCGTCCATCATCCATCATCCATCATCTCTCCCTTCACTCTACTTAGTCACTGATCCACACCATCTTCGCCGGCGACGGCTACAACCTTTAACACTCAAAACGCCTCCGTTTCAAAAACCATCGATACCCACTATGTCCCATTTCCGGAAACTCCAGTTAACATACTTCATCTCCAAAATTTCCCACACTTGCCTTAAACCCTCGCTAAGCCCTAGATTCCACAGCGCCAAATCTGCTCCCCAATCCGCACTAAAAAACTGTGATTTCAAGTTCCCCTCGAAGGTCAGAAAGGAAGCACAAGTCGCATTGCTCGAGTACCTTCATTCCACAAGGAGCTTGCAGTTCCTTGATGCAGACAACATGTGCAAAAACTCGCCCTTTTTCCTCAACGATATTCTGAGCAAGGTTCTTCAGAAGAAGAAGATCGACACTGCTGCCAGCGACGTCAAGAAATCAATCTCGCGTTACCTCCGTTACCACCCAATTAACGAGTTCGAACCATTCTTCGAGAGTACAGGTTTGAAGCCTTTTGAATACTTGCACCTTCTTCCAAGGGACATGATGTTCATCAACGATGACACTGTGTTGATGGAGAATTATCATACTCTGTGTAACTATGGTGTTCCCAGGAACAAAATGGGAAAGATCTTCAAGGATGCACCTCAAGTTTTTCGATATGAAAGTGGGGTACTGGTGTCCAAGTTTCAGAGTTATGAAGAGCTTGGTGTGGCTTCTTCAACTTTGGTAAAGGTGATTTCTTTGAGCCCTAGGATTTTGGTTGGGGATGTTGACCTTTATCTTGTGAAGGTTTTGGAGAAATTGAATCGTCTTGTTGGTGAAGAAAAGGGTAGTACTTGGATTGAGGAGCAGTTGTTGGCTGAGAGTAGTTGTAATTTTGGGGTTATGCATGAGCTCTTGTGCTTGCTTGAGAAGGTTTACAGTGACAAAAAGTTGTTGGGTGAGATGATTGGCCAGCACCCTTTTGTTTGTTTTGAGGATTCTGGAGTTTGGGCATTGTCCCTCATTGTGTTCTTGGTGAAATTAGGGTTGTCCTTGGACCAAATAGCTATAATTTTTGTCAAGTTTCCGCAAATTGGGGTGTCGATGTTTCTGTCGAATTTGCGCAAATGTTTTACATTCCTGTCTGATATCGATATGCATGCTGCGGAGATTGGGAATATTTTCCAGTCTCATTCCTTGCTGATGGGTTCATTCACTATTAAGAAATCTAGTAGTTTGCTCAGTAGCTTGAATGTTGGCAAGAAAAGGGTCTGTAAGTTAGTGCAGGATAATCCGGAAGGGATGCAGAATTGGGCTGTGGGGAGGAAAATTCAGCCTTACCCTGAGGATAAGGAAATGAGGGCTCTGAAAACAGAGTTCTTGAAAACAAAGTTCTTGTTGAGCCTTGGATACGAAGAGAACTCGGAGGGAATAAAACAGGCTTTTAAGCTGTTTAGAGGTAAGGGAGATGAGCTTCAGGAGAGATATGATTTTATTGTTAATGCTGGCTTGGACGCTAAGGATGTTCGCGAAATGATTAAGGCTTCACCTCAGATTCTTAATCAGACCACAGATATGATCAACACGAAAATTGAGTATCTTGTGAATGAAGGATATCCTATATCAAGTTTAGTCGATTTCCCATCTTTTCTTTCCTATACACTTTGTAGAGTTAAGCTTAGGTTATCAATGTATAATTGGCTCAGAGACCATAGAGTTGTTCACCCCAGGCTTGCTTTGAGCACCATAGTTGCATGCTCAGAGGAATTATTCTTACGGTTGTATGTAAATCGGCATCCATCTGGCCTTCAAGTTTGGCAGGATTTGAAGTCCGAAATTTATCCTGAGAATAATAACATGATATGA 2079 0.4372 MQTQIQAAIARSRLRKQHFHRRVSPSRALPRRPLLQPPLRGVKVSIYDQNVVRPWGASPQKTQNLVLGLGSSSIIHHPSSLPSLYLVTDPHHLRRRRLQPLTLKTPPFQKPSIPTMSHFRKLQLTYFISKISHTCLKPSLSPRFHSAKSAPQSALKNCDFKFPSKVRKEAQVALLEYLHSTRSLQFLDADNMCKNSPFFLNDILSKVLQKKKIDTAASDVKKSISRYLRYHPINEFEPFFESTGLKPFEYLHLLPRDMMFINDDTVLMENYHTLCNYGVPRNKMGKIFKDAPQVFRYESGVLVSKFQSYEELGVASSTLVKVISLSPRILVGDVDLYLVKVLEKLNRLVGEEKGSTWIEEQLLAESSCNFGVMHELLCLLEKVYSDKKLLGEMIGQHPFVCFEDSGVWALSLIVFLVKLGLSLDQIAIIFVKFPQIGVSMFLSNLRKCFTFLSDIDMHAAEIGNIFQSHSLLMGSFTIKKSSSLLSSLNVGKKRVCKLVQDNPEGMQNWAVGRKIQPYPEDKEMRALKTEFLKTKFLLSLGYEENSEGIKQAFKLFRGKGDELQERYDFIVNAGLDAKDVREMIKASPQILNQTTDMINTKIEYLVNEGYPISSLVDFPSFLSYTLCRVKLRLSMYNWLRDHRVVHPRLALSTIVACSEELFLRLYVNRHPSGLQVWQDLKSEIYPENNNMI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00323 692 Gene3D Transcription termination factor 3, mitochondrial 407 680 IPR038538 -
Aip06g00323 692 PANTHER CGI-12 PROTEIN-RELATED 157 681 IPR003690 GO:0003690|GO:0006355
Aip06g00323 692 PANTHER MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED 157 681 - -
Aip06g00323 692 Pfam mTERF 274 503 IPR003690 GO:0003690|GO:0006355
Aip06g00323 692 Pfam mTERF 528 662 IPR003690 GO:0003690|GO:0006355
Aip06g00323 692 SMART mt_12 391 422 IPR003690 GO:0003690|GO:0006355
Aip06g00323 692 SMART mt_12 581 611 IPR003690 GO:0003690|GO:0006355
Aip06g00323 692 SMART mt_12 285 315 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00323 Aip-Chr6 3729796 3733948 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip06g00323 mTERF 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00323 - - lja:Lj1g3v4317450.1 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00323 06 3729796 3733948 Aip06g00323 06 3729796 3733948 ECH