Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00300 ATGGAGCTTGCTTTGAGCTTAGGGGAAGCACCTAAGTCCTTCAATTTGCTTGACAACACTTCCAAACTACCTAACAACAAGGATCCAGTGGGTTTCTGCATAGCACTTGGTGCTGCTGCTTCCTCCGCCGGAAAATCCTCCGAGGAAGAGAGAAGAGGATCCTCAGATCCGCCAGTTCAGCTCGACCTTCTCCCTTCAACGCCGGTTCTTCGCTCCCAACATCCATCTTCACACCTTCGAATTCCATGGCTCAACGATGCACGTACGCAAACCTTCCCCTTCCCTCTTTCTTTCGGTTTTTACAGGAGAGACGTGGAAGGTGGTGAGGGCAACGACAGAGGCACCAGCGACGACGACGAGAACGGATCCACCAGGAAGAAGCTCAGGCTCTCTAAGGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAACACACCACCCTTAATCCTAAGCAGAAACTGGCTCTTGCGAAACAGTTAAACCTTCGTCCCCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAGGTGGATTGCGAGTACTTGAAGAGGTGCTGTGACACCTTAACGGAAGAGAATCGGAGGTTGCAGAAGGAGCTTCAAGAGCTGAGGGCATTAAAGACTTCTCAACCCTTCTACATGCAGCTTCCGGCCACCACTCTCACAATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCGCCGCTAATAACAATGACGCTTCTCAGATTGCTTCCGCTTTGTCTCTTAGTAACAAGCCCAGAATCTTGCCATTTCCTAATACTCAGGCCCATCCTCCTCCGGCCCAAAAGGCCCATCAATGA 849 0.5029 MELALSLGEAPKSFNLLDNTSKLPNNKDPVGFCIALGAAASSAGKSSEEERRGSSDPPVQLDLLPSTPVLRSQHPSSHLRIPWLNDARTQTFPFPLSFGFYRRDVEGGEGNDRGTSDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAANNNDASQIASALSLSNKPRILPFPNTQAHPPPAQKAHQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00300 282 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Aip06g00300 282 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
Aip06g00300 282 SMART HOX_1 123 185 IPR001356 GO:0003677
Aip06g00300 282 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Aip06g00300 282 PANTHER - 105 251 - -
Aip06g00300 282 Coils Coil 187 217 - -
Aip06g00300 282 MobiDBLite consensus disorder prediction 263 282 - -
Aip06g00300 282 CDD homeodomain 125 182 IPR001356 GO:0003677
Aip06g00300 282 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 105 251 - -
Aip06g00300 282 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Aip06g00300 282 MobiDBLite consensus disorder prediction 105 128 - -
Aip06g00300 282 Gene3D - 129 179 - -
Aip06g00300 282 SUPERFAMILY Homeodomain-like 113 182 IPR009057 -
Aip06g00300 282 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Aip06g00300 282 MobiDBLite consensus disorder prediction 43 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00300 Aip-Chr6 3522048 3523153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00300 117 272 Homeobox Transcription Factor Family AT4G37790 67.500 7.45e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip06g00300 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00300 K09338 - gmx:100776113 331.643