Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00262 ATGAAGGACTTGTTAGTGGATTCCCCAGTTTGTGTTCTTGAGGATTTCCTAAGGACCTCAGAATCAGAATCAAGCACTTATTCTTCCAAAGAGCACACTTTGGATTCTGAGTCTCATCAAGATAAGCCTAAACATGTTTCTAAGTGGCACACTTTTGTGCAATTGCTCAGAAACAAGTCAAAGAAGCCTTTGGCCACATTGCATCCTCTTAGTGTTCTCAAGCTCTCAAGAAGAATGAGTGGTAGCATGAGGGAGACTTCACTTGCTACCATGGATTCTCATTCCTCATTATTGCATACTTCACCCTGGAAGATCTTCACTCACCATGACTTACAAATTGCTACTAAATATTTCAGCCAAGAGAATTTGATTGGGAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATCATCAGTTAGTAGCAGTTAAAAGACTAACAAGAGGAACAGCTGATGAAACTATAGGTGACTTCTTATCAGAACTTGGAATCATGGCGCATGTAAGCCACACCAACACTGCTAAATTGGTTGGTTATGGTGTGGAAGGTGGAATGCATCTGGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGGTCCAAGGAGAACCTTCCCTGGTCTATTAGGCAGAGAATTGCATTAGGAACAGCAGAGGGAATATTATATCTTCATGAAGGTTGTCAAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTACTCACTGATGACTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAATGGCTACCAGAGAATTGGACTCACCACAGTGTTACAAGATTTGAAGGGACATTTGGATACCTTGCTCCAGAATACTTACTCCATGGCATAGTAGACGAGAAAACAGATGTATTTGCCTTTGGTGTTGTGCTATTAGAATTAGTAACTGGCCGGAGAGCGCTTGATTACTCGCAACAAAGTCTTGTCCTATGGGCAAAACCTTTGCTGAAGAAGAATAAAATTAGGGAGTTGATTGATCCTTCACTAGGAGGTGATGACTTTGATTATAGACAGATTAATGTTATGCTCTTGGCAGCTTCTTTATGCATACAACAATCTTCAATTCGTCGTCCCTCTATGAGACAGATTGTGCAGCTTCTGAAAGGGAATCTTAGCTGCATCAAGTTTGCAAAGAAATCTCGAGTTCCATTCTTCACAAGAGTCTTTCAAGACGAGTTTCTTGACTCTGATTAG 1245 0.4048 MKDLLVDSPVCVLEDFLRTSESESSTYSSKEHTLDSESHQDKPKHVSKWHTFVQLLRNKSKKPLATLHPLSVLKLSRRMSGSMRETSLATMDSHSSLLHTSPWKIFTHHDLQIATKYFSQENLIGKGGYAEVYKGCLPNHQLVAVKRLTRGTADETIGDFLSELGIMAHVSHTNTAKLVGYGVEGGMHLVLELSEKGSLASVLYGSKENLPWSIRQRIALGTAEGILYLHEGCQRRIIHRDIKAANILLTDDFEPQICDFGLAKWLPENWTHHSVTRFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNKIRELIDPSLGGDDFDYRQINVMLLAASLCIQQSSIRRPSMRQIVQLLKGNLSCIKFAKKSRVPFFTRVFQDEFLDSD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00262 414 PANTHER PROTEIN KINASE FAMILY PROTEIN 7 412 - -
Aip06g00262 414 Gene3D Phosphorylase Kinase; domain 1 78 192 - -
Aip06g00262 414 SUPERFAMILY Protein kinase-like (PK-like) 92 384 IPR011009 -
Aip06g00262 414 Gene3D Transferase(Phosphotransferase) domain 1 195 398 - -
Aip06g00262 414 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00262 414 Pfam Protein kinase domain 119 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00262 414 PANTHER OS08G0249100 PROTEIN 7 412 - -
Aip06g00262 414 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Aip06g00262 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Aip06g00262 414 SMART serkin_6 118 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00262 Aip-Chr6 3061699 3063751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00262 105 380 Trihelix Transcription Factor Family AT1G68690 43.206 6.16e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aip06g00262 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00262 - - gmx:100780587 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00262 06 3061699 3063751 Aip06g00988 06 14099150 14104645 ECH
Aip06g00262 06 3061699 3063751 Aip09g01780 09 46316632 46329931 ECH
Aip06g00262 06 3061699 3063751 Aip06g00262 06 3061699 3063751 ECH
Aip06g00262 06 3061699 3063751 Aip02g02858 02 104747761 104752240 ECH
Aip01g02745 01 128843413 128846134 Aip06g00262 06 3061699 3063751 ECH
Aip04g00388 04 4666397 4669283 Aip06g00262 06 3061699 3063751 ECH
Aip06g00262 06 3061699 3063751 Aip02g02858 02 104747761 104752240 PCT