Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00232 ATGGAATCGAAAATGTCCTTTACTTCTGGAGGAACCAGTTGCCATGTTACTGGTTCAGCTGCTGAGGATGATTCAAACATGCAAGATGCTGTTGCAACTGAAGAAGGGAGTGGGAGCCAATGGAGTTTCCTCCCAAAACCATCTCATCATAACTATGTTCAGTATCTGACTGAATCCTCAAACTATCTGCCTAAGACTGAGGATATGATTGGGAGCAATTATGCAGCTCTTGGATTTGGAAACGATGGCAATGGAACAAACATGAACTTCTTTTGTAATGATCCTGGAAAAGCTTATGCCTTTAAAACTGAAGTTCATTCTTCCAATGAAGTTGACATTGGCAAGCAAGTGGGGTATTGGAGACCTGCTGAGAGTGAAGTCCAGCAGGAAGCAATGCAATTTGAAAGTACTCAACATCATCACCCTCTCTATCCTGAGAGTCCTGCTTCATGGACACCAGAAGCAATTGGAGATAATCCTAATGTTTCACGGCTTGATCCATCGGTATTGGCTGGCACACCTAGTTTCCTTCCTAAACCAGCAAGACAGAAAGCCAGTGACCGACAACGCAGGCAACGAATTGCCGATAATCTGAAAGCACTACACGACTTGCTTCCAAATCAAGCAGAGGGTAGTCAAGCTTATATACTGGACGACATTATCGACCATGTTAAATATTTGCAGCTTCAGTTAAAGGAACTAAGTGGAAGTAGACTACAAGCTGAATCAACTGCTATACCACTGGTTTTCCATGAGCAGGGTTATGGGCATTATATTGACCAGCAGAAGCTGAATGAACCACTTGAAGAGATGATGGGGAAACTTCTTGAAGAGAATCCTGCATCTGCCAGTCAGCTTCTGGAGAACAATGGTCTTGTCCTGCTGCCTATGGAGTTGGTTCAAGACTTGCACCAATCCATGCAAATCTTCGGCAACGGCAATGCACTTGTCTGA 954 0.4392 MESKMSFTSGGTSCHVTGSAAEDDSNMQDAVATEEGSGSQWSFLPKPSHHNYVQYLTESSNYLPKTEDMIGSNYAALGFGNDGNGTNMNFFCNDPGKAYAFKTEVHSSNEVDIGKQVGYWRPAESEVQQEAMQFESTQHHHPLYPESPASWTPEAIGDNPNVSRLDPSVLAGTPSFLPKPARQKASDRQRRQRIADNLKALHDLLPNQAEGSQAYILDDIIDHVKYLQLQLKELSGSRLQAESTAIPLVFHEQGYGHYIDQQKLNEPLEEMMGKLLEENPASASQLLENNGLVLLPMELVQDLHQSMQIFGNGNALV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00232 317 SMART finulus 184 233 IPR011598 GO:0046983
Aip06g00232 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 300 - -
Aip06g00232 317 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 21 300 - -
Aip06g00232 317 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Aip06g00232 317 Gene3D - 180 246 IPR036638 GO:0046983
Aip06g00232 317 MobiDBLite consensus disorder prediction 1 43 - -
Aip06g00232 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 242 IPR036638 GO:0046983
Aip06g00232 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Aip06g00232 317 CDD bHLH_AtbHLH_like 186 235 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00232 Aip-Chr6 2452577 2455692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00232 186 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.655 2.54e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00232 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00232 - - cam:101507064 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00232 06 2452577 2455692 Aip06g00232 06 2452577 2455692 ECH