Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00219 ATGCCAAGCTGTAGCAGGGTTCAAAGCATGCTGCAGGCTGCGGTTCAATCACTTCACTGGACTTACACCATCTTTTGGCAACTCTCTCCACAACAAAGAGTTCTAAGGTGGAGTGATGGATTCTACAATGGAGAAATTAAGATTAGGAGGACAGTTGAAGCAATAGAGGCTAACAAGAGTAGTAGTAATAATGAGGAGGCGTCTCTCCAGAGAAGCAACCAGCTTAGAGACCTCTATGACTTACTATTGTCTGATCGCCATGGAGACCACGTCTTCGCTGTTGATCCTCCGGCAACTCCGCGTCCTTCCACCGCTTTGTCGCCGGAGGATCTTAGCGAATCCGAATGGTACTATTTGATGTGTGTCTCCTTCTCCTTTGCTCCTGGTGTAGGGTTGCCGGGAAAGGCATATGCGAGGAGGCAGCATGTTTGGCTCCAAGGTGCAAACGAAACGGACACCAAGACATTTTCAAGAGCAATTCTTGCCAAGAGTGCTCATGTGAAGACAGTGGTGTGCATTCCAATGTTGGATGGCGTCGTTGAAGTCGGCACCATTGATAAGGTAAAAGAAGACATCAACGTAATCAAACATGTAAAGAGCTTCTTCATAGGAGATCACCACCGTCCCCAACCAAAGCATGCCCTATCTGAAAACTCTGCCTCCAATCCCATTACAGAAGAAGCTCAATTATTATTGGATTCAGAAACAGCAACCCTCCCACAAAGCAAGCTTAAGGAGCCGGTCGTGGCAGAGGACGGTAGCCGAGCCGGATCGCCGGATGATGGCTCCAATCGGCTGAACTCAGCCGGGTTGGAGCTGCTTCCACCAGAATCAGCAGCTTCACTAGAACTACTACATGGTGATGAGTATGATAATAACTCAGAGGCCGAGACATCTCACCTATGTACGGAGCAAGAAGGCCACACACACTACTCTAAAACGGTGTCCACCATCCTTGAAGGCAGCTCCGGCCATCGGCCGGATGCTGTTTGCGGCTTATTGTCCTTCCAATCAGCTTTTGCCACGTGGAGCAGCCGTGCTTATAACTGCCACCAGGTGACGGTGGTTGAAAACCCCCAACGGCTCCTCAAGAACATATTGTTTAGGGTTCCATACTTGCATCGCAAGCAAAACCGCCACAATTCAGCAGAAACCCTAGAACAATTGGAAAGAACGATAATGCCTTCTCCACAAGATGACCTAATCAGCAGCCACGTGGCAGCGGAGCGGCGGCGTCGCGAAAAGCTGAACGAGAAGTTCATCACGTTAAGGTCGTTGGTACCATATGTGACGAAAATGGACAAGGCTTCTATATTAGGAGACACAATTGAGTACGTGAAACAGTTGCACGAGAAGGTGAAGAAGCTGGAGGAGGAAGATCAACGGCGGAGAAGTGGAAAGAAGAGGAAGGAGAGGGCGGTGGAGGTTTCGGTGATAGAGGGTGAGATTTTGTTGGAGGTGGAGTGTATGAATAGGGAAGGGTTGTTGCTTGATTTGATGAGAACATTGAAGGAGGTGGGAATAGAGGTGAGAGGGGTAAAATCGTCATTTAAGGGTGATGATGAAAGGGTGTTTGTGGTGGAGTTAAGAGGCAAGGTGAAAGAAAATGGAAAAAGGAATAATAATAATAAGAAGAATAAGAAGATTAGCATCGTGGAAGTGAAGAAGGTCCTTCATAACATTATAAACCCTCATCATCATCCACTATAA 1710 0.4766 MPSCSRVQSMLQAAVQSLHWTYTIFWQLSPQQRVLRWSDGFYNGEIKIRRTVEAIEANKSSSNNEEASLQRSNQLRDLYDLLLSDRHGDHVFAVDPPATPRPSTALSPEDLSESEWYYLMCVSFSFAPGVGLPGKAYARRQHVWLQGANETDTKTFSRAILAKSAHVKTVVCIPMLDGVVEVGTIDKVKEDINVIKHVKSFFIGDHHRPQPKHALSENSASNPITEEAQLLLDSETATLPQSKLKEPVVAEDGSRAGSPDDGSNRLNSAGLELLPPESAASLELLHGDEYDNNSEAETSHLCTEQEGHTHYSKTVSTILEGSSGHRPDAVCGLLSFQSAFATWSSRAYNCHQVTVVENPQRLLKNILFRVPYLHRKQNRHNSAETLEQLERTIMPSPQDDLISSHVAAERRRREKLNEKFITLRSLVPYVTKMDKASILGDTIEYVKQLHEKVKKLEEEDQRRRSGKKRKERAVEVSVIEGEILLEVECMNREGLLLDLMRTLKEVGIEVRGVKSSFKGDDERVFVVELRGKVKENGKRNNNNKKNKKISIVEVKKVLHNIINPHHHPL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00219 569 Coils Coil 439 459 - -
Aip06g00219 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 449 IPR011598 GO:0046983
Aip06g00219 569 PANTHER TRANSCRIPTION FACTOR TT8 7 563 - -
Aip06g00219 569 MobiDBLite consensus disorder prediction 241 270 - -
Aip06g00219 569 Pfam Helix-loop-helix DNA-binding domain 404 450 IPR011598 GO:0046983
Aip06g00219 569 SMART finulus 406 455 IPR011598 GO:0046983
Aip06g00219 569 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 202 IPR025610 -
Aip06g00219 569 Gene3D - 402 473 IPR036638 GO:0046983
Aip06g00219 569 PANTHER TRANSCRIPTION FACTOR TT8 7 563 - -
Aip06g00219 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 462 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00219 Aip-Chr6 2329181 2336236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00219 7 562 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 44.640 9.49e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g00219 bHLH-MYC_N 2.6e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00219 - - aprc:113862120 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00219 06 2329181 2336236 Aip06g00219 06 2329181 2336236 ECH