Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00209 ATGCCTAATCTCAGAAGTCACCCTCTCAGTAGAGAAGAAAACCCTAGTCCAAACACACGAAGAAAACCCTTTCAGAAAACCCTGCCTCCTGCACCGCGCGAAGATCATCGCACCCCAGTCCCCACTCACCACTCAGCGCCACACCGTCGTGAAGCTCACACCGTCGTGAACCCTCCTGCACTCAGCTTAAAATACCACTACGTAGCTGTCACCGCCTCCTCCAAATCTGACCCTGAGTTCCTCAAGTTGAATCCTCTTGCTTTAATTCCCGTTCTGGTGGATGGCGATTTTGTTCTTGTTGAATCTTTAGCCATTATTATGTATTTAGATGATAACTATCCTCAATACCCTTCGCTGCCTCATGACATTCCCAAAAGAGCACTCAATTTTCAGGTTGCACATATTGTTTTGCAGAATAACGTCATTGAGAAAAATGTTGGCCCTCATGAAAAACTTCCTTGGGCACAAAGTGTCATTAGAAAGGGCTTCACAGCACTTGAAAAGCTACTAAAAGATCACGCAGGGAGATATGCCACTGGAGATGAAATTTTCCTGAGGCGCAAAAGGGAACTTGCTGACGAACTGAGAGCTCAGAGCCTGGTTGGCTCTGATAATCATCACACAAAAGAAACCTCTGCCGCTGAAATGGCTGGAGTAGGTGTGACTCCTCCAAAAAGAGAGGATTCAAAAAAGGACGAAGATGGATCCAACAAAGGACCATCGCCTTATGATCTGAGCATTAGCGACAATCCTGGAAACGTAATCACACAAGTGCAATTACAAGGAGAGAACTACGAAGAATGGGCTCGAGCTGTGAAGGTGTCGCTACGTGCTAGGAGAAAGTGGGGGTTTCTAGATGGAACTCACAAGAAGCCACAAGAAGGGGCATCTGAAATGGAGGATTGGTGGACGGTTCAATCCATGCTTGTCTCATGGGTGATGAATACGATTGAGCCACGGCTGCGCTCTACCATCTCATACACTGAAGATGCAAAGGATCTCTGGGAAGAAATCAAGGAGCGATTTTCCATCGTGAATGGTCCTAGAATTCAACAATTGAAAGCTGAACTTGCCGAGTGCAAACAACAAGGACTGGCTATGGTGGAATACTATGGAAAACTGAAGACTCTTTGGGATGAGTTGGCAAACCATGAACCAGTGCTTAGATGCTCTTGCGGAGGCTGCAAGTGTGACATTGGGTCACGATTAGATAAGAGAAGGGAAGAAGAAAAGGTGCATCAATTTCTAATGGGGTTAGAAGACGTAAGCTATGGCACAGTGCGATCTAATATTCTCGCAACGGATCCTCTACCTTCTCTCAACAGGGTGTATGCAACTTTGGTACAGGAAGAGAGAATGAAGATGATCAGCAGAACCAAGGAAGACAAAGGAAGCTTAATGGGACTGGCAGTACACACTGGGTACAAGCACAAAAGCCGAAATGAAATAAAGCCACTCGTATGTTCTCACTGCGGAAGAACAGGACACGAGATCAAGGGGTGCTTTCAACTGATTGGGTATCCGGAATGGTGGGGAGATCGATCTCGAGACGAAAAGGGAAGCAACACCAAGACCTCGCATAAGCAGGGAGGACGCTTGCGAGGGGGGGCTGTCATACGTGCCAACACAGCACAAGCCACAACAGAAAAATCAAGTAACCATGAAGAAGAAATAGGAGGAAGCGCAGTGACTGGACTTAGCCAAAAACAATGGCAGACGCTGTTAGAGATGCTAAATGGCAACAACGGAAGTAGAACTGAAAGCATGACTGGTAAGGAAGGATATGTTGTGTGGATTATAGATAGTGGAGCCTCTAACCATATGACAGGGAATTCAAGAGATCTAAAGGGGTCTAGAGCGTATTGA 1866 0.4636 MPNLRSHPLSREENPSPNTRRKPFQKTLPPAPREDHRTPVPTHHSAPHRREAHTVVNPPALSLKYHYVAVTASSKSDPEFLKLNPLALIPVLVDGDFVLVESLAIIMYLDDNYPQYPSLPHDIPKRALNFQVAHIVLQNNVIEKNVGPHEKLPWAQSVIRKGFTALEKLLKDHAGRYATGDEIFLRRKRELADELRAQSLVGSDNHHTKETSAAEMAGVGVTPPKREDSKKDEDGSNKGPSPYDLSISDNPGNVITQVQLQGENYEEWARAVKVSLRARRKWGFLDGTHKKPQEGASEMEDWWTVQSMLVSWVMNTIEPRLRSTISYTEDAKDLWEEIKERFSIVNGPRIQQLKAELAECKQQGLAMVEYYGKLKTLWDELANHEPVLRCSCGGCKCDIGSRLDKRREEEKVHQFLMGLEDVSYGTVRSNILATDPLPSLNRVYATLVQEERMKMISRTKEDKGSLMGLAVHTGYKHKSRNEIKPLVCSHCGRTGHEIKGCFQLIGYPEWWGDRSRDEKGSNTKTSHKQGGRLRGGAVIRANTAQATTEKSSNHEEEIGGSAVTGLSQKQWQTLLEMLNGNNGSRTESMTGKEGYVVWIIDSGASNHMTGNSRDLKGSRAY 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00209 621 Pfam gag-polypeptide of LTR copia-type 247 292 IPR029472 -
Aip06g00209 621 SUPERFAMILY GST C-terminal domain-like 119 183 IPR036282 -
Aip06g00209 621 Pfam Glutathione S-transferase, N-terminal domain 61 115 IPR004045 -
Aip06g00209 621 MobiDBLite consensus disorder prediction 198 251 - -
Aip06g00209 621 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 39 117 IPR004045 -
Aip06g00209 621 Pfam Retrotransposon gag protein 322 420 IPR005162 -
Aip06g00209 621 MobiDBLite consensus disorder prediction 27 51 - -
Aip06g00209 621 MobiDBLite consensus disorder prediction 224 238 - -
Aip06g00209 621 Gene3D - 124 270 - -
Aip06g00209 621 SUPERFAMILY Thioredoxin-like 60 120 IPR036249 -
Aip06g00209 621 MobiDBLite consensus disorder prediction 1 54 - -
Aip06g00209 621 PANTHER - 308 598 - -
Aip06g00209 621 Gene3D Glutaredoxin 43 123 - -
Aip06g00209 621 PANTHER - 308 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00209 Aip-Chr6 2166728 2171016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00209 60 185 Glutathione S-transferase Gene Family AT2G02380 48.227 1.45e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00209 - - gmx:112999620 528.48