Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00197 ATGTCGAAAGATTCATCAATCTCGAGTTCTGACGATGATTCGGTTGTGTTCTTGGGGGATGTTACACCCCAAGGTAACCGTAACCGTAACCGTTACCGTCGTGTGCGTCGACGCATGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAACCGTAGCCTAATCGTTGGAGGTCATGATCTGCGTGCGAGGAGGACCGTGACGGGTAATAACCAGCCTAACCGTGACGGCAACGCTTCTGAAGAGAGTACTACAGCGACTAAGAAGGCAGCAGGTCAAGTAAGAAAGAGTGGTGATGCAAACTTTCAAGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGAGGAATAAGTTGCTACGCGCCGGTTGGGAAATTGGGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAAAGGGAGAGCTTATACCAATTGCATCATAGCTGCGTACGAGTGTTTGAAAAAGAAGTATGAGGAGCACAAAGGAAGAGGGATCTATTATTTGAAGAATTTCAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGAAAAAGAAAAGATGAAGCTCATGACCCAAACCCTAATAATAACGATCGTAATAAGAGGGGAAAGAATAGCAGGGAAGACGCGAACAAGAAGAAGCAGAAACAGAGGGTGGAAACGAGCAGGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGATTCTGACAAGGATCCAAATGATAACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTAGTTTGTTGCGACGGTTGTCCTTCTTCTTTTCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGTATCATCATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGTTGTTTGCGAGAGTTCAAGGGCTTCTTGGGATCAAACATGAAATTGGAGATGGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTTCCCAACTTCCAGAATGTCATGACAAGCTGTTTAGTGCACTGAAAATAATGCAAGATGGATTCAAACCTGGATATGATCATAGAACAGGAGTAAATTTGATACAAAATGTTGTATACAGTCGTGGGGTTCATGAAAACAAAGTAGCAGAGATGCCACTCATTACAACCCGTGGTATGTATAGGCGACAAGGAATGTGTACCCGCTTCATGACAGTCATCGAATCTGTACTAAGCAGTTTGGGTGTTGACTTATTGGTCATACCATCAATCAAAGAACGCGAGAAGATTTGGGTTTCAGTGTTTGGAAAAACATTAACAGGGTTGTTTGAGAAGAAGTTCCTAATACTGAGAAGAACCAATTCTAATGCGAATCCTGTGTGTCCCAAATGA 1638 0.4274 MSKDSSISSSDDDSVVFLGDVTPQGNRNRNRYRRVRRRMLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTTATKKAAGQVRKSGDANFQVGESSKIQKRKTKKRGRKKKKKENDDVLDEMRNKLLRAGWEIGIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEEHKGRGIYYLKNFKFTPIKDDDFEKLLSWKDAKKRKRKDEAHDPNPNNNDRNKRGKNSREDANKKKQKQRVETSRKGKEKVVYDESDSDSDSDSDKDPNDNTCLLCANAREGTLVCCDGCPSSFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIIIDLSDNPLHFCSNKCEQLFARVQGLLGIKHEIGDGFSCTFLSGFENNRPSQLPECHDKLFSALKIMQDGFKPGYDHRTGVNLIQNVVYSRGVHENKVAEMPLITTRGMYRRQGMCTRFMTVIESVLSSLGVDLLVIPSIKEREKIWVSVFGKTLTGLFEKKFLILRRTNSNANPVCPK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00197 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 384 IPR013083 -
Aip06g00197 545 SMART PHD_3 286 329 IPR001965 -
Aip06g00197 545 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 67 273 - -
Aip06g00197 545 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 459 519 - -
Aip06g00197 545 PANTHER PHD FINGER PROTEIN 12 67 273 IPR042163 GO:0003714|GO:0045892
Aip06g00197 545 MobiDBLite consensus disorder prediction 1 133 - -
Aip06g00197 545 MobiDBLite consensus disorder prediction 218 271 - -
Aip06g00197 545 Pfam PHD-finger 287 331 IPR019787 -
Aip06g00197 545 MobiDBLite consensus disorder prediction 1 28 - -
Aip06g00197 545 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 280 458 - -
Aip06g00197 545 PANTHER PHD FINGER PROTEIN 12 280 458 IPR042163 GO:0003714|GO:0045892
Aip06g00197 545 PANTHER PHD FINGER PROTEIN 12 459 519 IPR042163 GO:0003714|GO:0045892
Aip06g00197 545 ProSiteProfiles Zinc finger PHD-type profile. 284 331 IPR019787 -
Aip06g00197 545 SUPERFAMILY FYVE/PHD zinc finger 259 330 IPR011011 -
Aip06g00197 545 MobiDBLite consensus disorder prediction 218 282 - -
Aip06g00197 545 MobiDBLite consensus disorder prediction 69 95 - -
Aip06g00197 545 ProSitePatterns Zinc finger PHD-type signature. 287 328 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00197 Aip-Chr6 2015444 2023530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00197 281 518 PHD Transcription Factor Family AT4G14920 37.226 5.20e-54 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip06g00197 PHD 5.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00197 - - ahf:112696224 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00197 06 2015444 2023530 Aip06g00197 06 2015444 2023530 ECH
Aip06g00197 06 2015444 2023530 Aip02g00765 02 12007448 12014677 PCT