Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00176 ATGGTTCCTCCGCCGCAGCCAATGGAGGGGCTCCACGAAGCGGGGCCACCACCATTCCTGACGAAGACGTTCGACGCGGTGGACGATCCGGCCACAGACCACGTAGTGTCGTGGAGCCGAAGCGGAGCAAGCTTCGTGGTTTGGGATCCGCACGCCTTCTCCAGAGGCCTTCTTCCAAGATACTTCAAGCATAACAACTTCTCCAGCTTCGTAAGGCAGCTCAACACTTACGGTTTTAGAAAGATTGATCCAGATAAATGGGAATTTGCGAATGAAGGGTTTGTGAGAGGGCACAGGCACCTGTTGACAAGTATAAGGAGAAGGAAGGCGCCTCCGCCACCAATTCAAACGCAGACTTCGCAGTCGCAGCAGGGTCACTGCCTTGAAGTAGGGCGGTTCGGATTGGATGAAGAGATCGACCGGTTGAGGCGTGACAAGCAGGTTTTGATGTTGGAGCTTGTGAGGCTAAGACAGCAGCAACAAACCACAAGATCGTATCTTCAGGCAATGGAGCAGAGGCTGCAAGGTACTGAGATCAAGCAGCAGCAGATGATGGCTTTCTTGGCCAAAGCAATGAAGAACCCCGTGTTTATACAGCAACTCATACAGCACAAGGAGAAGAGGAAGGAGCTTGAGGATGCCATGACCAAGAAGAGGAGGAGGCCCATTGAGCAAGGGCCTAGTTGCAGCGCCACTACTGTTAAGGTTGAGAATCCACCAGAGTTTGCTGGTTATGCTGGTGGCTTTGGAGCTTCTGAGCTTCAAATTCTGGCTATGGAGATGCAAGGATATGGTAGAGGGAGGCGAGAGAGTACTGAACATGAGCATGAGCAAGAGCAAGAGCAAGAGAGGCTTGACAAGGAGCTTGATGATGAAGGCTTCTGGGAAGAGCTGTTCAGTGAGAATTTTGAGGGTGATTTGGACATTTCACAAGATGAAGAAGAGGATGAGGGTTCATCTGGTGGATGGAGTTTCAACTTTCAACTGTTCAAGCTCATCATCACCTCAATTGGGGGCAAGACAGTTGCAGGCGTTGATTGGAACAAGGATTCTGTGGTAGTGATAGCGGTACTATTACTCAAGATGATTGAGAAGATGTAG 1101 0.5041 MVPPPQPMEGLHEAGPPPFLTKTFDAVDDPATDHVVSWSRSGASFVVWDPHAFSRGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFVRGHRHLLTSIRRRKAPPPPIQTQTSQSQQGHCLEVGRFGLDEEIDRLRRDKQVLMLELVRLRQQQQTTRSYLQAMEQRLQGTEIKQQQMMAFLAKAMKNPVFIQQLIQHKEKRKELEDAMTKKRRRPIEQGPSCSATTVKVENPPEFAGYAGGFGASELQILAMEMQGYGRGRRESTEHEHEQEQEQERLDKELDDEGFWEELFSENFEGDLDISQDEEEDEGSSGGWSFNFQLFKLIITSIGGKTVAGVDWNKDSVVVIAVLLLKMIEKM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00176 366 Gene3D - 11 109 IPR036388 -
Aip06g00176 366 MobiDBLite consensus disorder prediction 264 287 - -
Aip06g00176 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 319 IPR027725 -
Aip06g00176 366 MobiDBLite consensus disorder prediction 266 287 - -
Aip06g00176 366 MobiDBLite consensus disorder prediction 214 235 - -
Aip06g00176 366 Coils Coil 139 159 - -
Aip06g00176 366 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g00176 366 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g00176 366 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Aip06g00176 366 Coils Coil 201 221 - -
Aip06g00176 366 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g00176 366 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g00176 366 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g00176 366 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g00176 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 4 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00176 Aip-Chr6 1778929 1780859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00176 5 306 HSF AT3G22830 54.438 2.02e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip06g00176 HSF_DNA-bind 2.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00176 K09419 - gmx:100794264 443.736