Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00143 ATGGCGAATCGGGTGGTGAAGGTGAAGAGGGAGACGATTGCGGCATGCATGACTTGCCCCCTCTGCAACAAGCTCTTCAGAGAAGCCACCACCATATCCGAATGCCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTGACTTGGGTTGTGTTCCACTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGACAAAGACACCTGAACCTGCTGCCCCCTCGGTACCGTTACCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTGCACAAGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTGGTAGTCTGCGATCCTCTAGTTTTTCCATCGAAAAGTCCATTAAAAAGGAGGAAGAAGTACTAGAAGATCATCCTGGGAGTTCAAGTTCACCGGACACTTCAAATAAGTTTGCTGAAGATACTCGACAGAGTTCATCCCCTCGTGAAGGCAGTCAACCCTTACCAAATAAAGGAACAGAGAATGGTGCCGAATCATGGGATGCAAAATTGGATCTTTGGAAACCCTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGCAAATCTTTCAAGTCTAATGCACAAGGGTCTGATGCTAAACCAGAAACCATTCAAGTAAATGAGACTGATTCTCAAGTGCTAAAAATAAAAAATAAGGAAAATAAACGCAAGGGGAAGACTGAGGATGAAAAGACTAGCAGTTGTCCTGTCTCTTCTGATACAGTGAAACCCAATAAATCGCGTAGAGTTCGGCGTAGAAAGGAACCCCCTTTTGGGGAATCAGGCATATTACCCCAAGCTGTGCTGGATTCTAACAGCAGTAAACACTTAAGGAGTTGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAGAACCAGGAAGGAGACGCACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCATACCTGTCTCATTTATCCAAAAATACTTAGTGAAGAAACTAGAGCTGACCAGTGAAGCAGAGATTGAGATTAAATGTATGGGGCAACCAGTGCTCCCTACACTGCGGCTACAAAATTTGGTTGAGTTGTGGCTGGATTCAGCCGCCACGTCACAGCGGATTCCAGCAACCATTGGGTCATCAGCAAAGGATTTTGTGATGGTCCTGGCCTATGCTCGGAAGGTCCCACATCCTTGA 1293 0.4478 MANRVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVTKTPEPAAPSVPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKAGSLRSSSFSIEKSIKKEEEVLEDHPGSSSSPDTSNKFAEDTRQSSSPREGSQPLPNKGTENGAESWDAKLDLWKPLNCLVEVASRSKSFKSNAQGSDAKPETIQVNETDSQVLKIKNKENKRKGKTEDEKTSSCPVSSDTVKPNKSRRVRRRKEPPFGESGILPQAVLDSNSSKHLRSCPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKYLVKKLELTSEAEIEIKCMGQPVLPTLRLQNLVELWLDSAATSQRIPATIGSSAKDFVMVLAYARKVPHP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00143 430 MobiDBLite consensus disorder prediction 89 204 - -
Aip06g00143 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 - -
Aip06g00143 430 SUPERFAMILY RING/U-box 14 83 - -
Aip06g00143 430 SMART ring_2 19 59 IPR001841 -
Aip06g00143 430 MobiDBLite consensus disorder prediction 167 200 - -
Aip06g00143 430 MobiDBLite consensus disorder prediction 229 301 - -
Aip06g00143 430 MobiDBLite consensus disorder prediction 229 252 - -
Aip06g00143 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Aip06g00143 430 MobiDBLite consensus disorder prediction 253 273 - -
Aip06g00143 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 103 IPR013083 -
Aip06g00143 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Aip06g00143 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Aip06g00143 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 IPR044807 GO:0004842
Aip06g00143 430 MobiDBLite consensus disorder prediction 114 150 - -
Aip06g00143 430 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00143 Aip-Chr6 1395872 1400878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00143 2 349 C3H Transcription Factor Family AT2G30580 53.276 1.12e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00143 K16277 - gmx:100793731 687.952