Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00136 ATGCCTCCCGAAAAGGGAACGGGAGCCGTTGATAGAGATGAATCGGAGGGCCGAAATTCAAACTTGAAGCGAGGAGCGATCCATGCGGAGGCTGAGCCCGAAGCAACCGCCGAGCCACCTCCGGAGGCAGAGCCCGAGAACCCAACTCCCAAGCCCAAGAAGGCCGCTAAGGAGCCCAAGCCCAAAAAACCCGCGGCTCCTAGATCTCGAAACCCCTCTCACCCTCCCTACGAAGAGATGGTTAAGGACGCGATTGTGACGTTGAAGGAGAAAAACGGTTCCAGTCAATACGCGATTCAGAAGTTCGTAGAAGAGAAACAGAAGCAGCTACCTTCCAACTTCAGGAAGCTCTTGTTGTATCATTTGAAGAAGCTCGTTGCTTCTGGAAAGCTCGTTAAGGTCAAAAGCTCCTTCAAGCTTCCTCCGGTCAGGTCTTCAGCTCCCAAACCCGCTTCTGCTGCCCCCGCCAAGAAGAAGGCTGCAGCTGCTAAGCCCAAACCAAAGCCCAAGCCCAAAGCTAAGCCTGCCTCTAAGGCCAAGGACACCAAAACTACTAAGTCAGCAGCAGCCAAAGCACCTGCCAAGGCCAAGGCCGCTGCAAAGCCCAAGCCCAAGCCCAAGCCAGCTGCTAAACCCAAGGCGGTTGCTGCTAAGACCAAGGCAGCTCCGGCCAAGTCTAAGGCCAAGGCTAAGACGGCGCCAGCTGCAAAGCCGAAGGCAGCTGCGAAGCCTAAACCGGCTGCTAAGCCCAAGCCCAAGCCCAAAGAGAGGCCCTCCAAGGCTTCTAGAACGTCGACGAGAACTTCACCGGGGAAGAAAGCCCCTGCAGCTAAACCTGCGGCGAAGAAGGCAGCTCCCGCGAAGAAGGCCCCTGCAAAGGGTGCAAAGGCGAAGACCGTGAAATCTCCTGCGAAGAAGGCGACGACGGCGAGAAGGGGGAGAAAGTGA 948 0.5665 MPPEKGTGAVDRDESEGRNSNLKRGAIHAEAEPEATAEPPPEAEPENPTPKPKKAAKEPKPKKPAAPRSRNPSHPPYEEMVKDAIVTLKEKNGSSQYAIQKFVEEKQKQLPSNFRKLLLYHLKKLVASGKLVKVKSSFKLPPVRSSAPKPASAAPAKKKAAAAKPKPKPKPKAKPASKAKDTKTTKSAAAKAPAKAKAAAKPKPKPKPAAKPKAVAAKTKAAPAKSKAKAKTAPAAKPKAAAKPKPAAKPKPKPKERPSKASRTSTRTSPGKKAPAAKPAAKKAAPAKKAPAKGAKAKTVKSPAKKATTARRGRK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00136 315 MobiDBLite consensus disorder prediction 47 65 - -
Aip06g00136 315 PANTHER HISTONE H1.1 188 315 - -
Aip06g00136 315 PANTHER HISTONE H1.1 31 220 - -
Aip06g00136 315 SUPERFAMILY "Winged helix" DNA-binding domain 70 151 IPR036390 -
Aip06g00136 315 Gene3D - 68 147 IPR036388 -
Aip06g00136 315 Pfam linker histone H1 and H5 family 74 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip06g00136 315 PRINTS Histone H5 signature 164 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip06g00136 315 PRINTS Histone H5 signature 60 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip06g00136 315 PRINTS Histone H5 signature 87 104 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip06g00136 315 PRINTS Histone H5 signature 201 218 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip06g00136 315 MobiDBLite consensus disorder prediction 1 83 - -
Aip06g00136 315 SMART h15plus2 71 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip06g00136 315 MobiDBLite consensus disorder prediction 7 31 - -
Aip06g00136 315 CDD H15 72 142 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip06g00136 315 MobiDBLite consensus disorder prediction 131 315 - -
Aip06g00136 315 PANTHER HISTONE H1 188 315 - -
Aip06g00136 315 PANTHER HISTONE H1 31 220 - -
Aip06g00136 315 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 73 142 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00136 Aip-Chr6 1337362 1338740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00136 78 168 Single Myb Histone (SMH) Gene Family AT1G49950 34.043 6.10e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00136 K11275 - pvy:116120946 139.428