Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00130 ATGGAAGAAGAGGATACGGATCCATCGCCCCCGGAAACTGCTGGCAGATCGTACGAGTGTGTCTTCTGCAAGAGAGGCTTCACAACTGCACAAGCCTTAGGTGGACACATGAACATTCATAGAAAGGACAAGGCCAATAACAGAACTAAACCTACTACTACTTTTCTTATTCCTTCTTCTTTGATAAGTTCTTCTTCAACTCAACTTCATAATTCCGATCATCATCTCGGCTTCTATTACTTTTCATCATCAACTTCCAGACGGAATACCTATGAGGTTCATTCTGATTGTTCTTCTTCCAATCAAGGTTATTTTCCTCCACCAAAGGAGAGAAACTTGAGTTCTTGCAATAATAATAATAATAATAATCCATCATCGTCATCATGTGTTGCTCAAGTTAAAGACAAGCTTGAAGCTTCTTCAATGGAGAAATAA 435 0.3908 MEEEDTDPSPPETAGRSYECVFCKRGFTTAQALGGHMNIHRKDKANNRTKPTTTFLIPSSLISSSSTQLHNSDHHLGFYYFSSSTSRRNTYEVHSDCSSSNQGYFPPPKERNLSSCNNNNNNNPSSSSCVAQVKDKLEASSMEK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00130 144 PANTHER OS07G0101800 PROTEIN 8 128 - -
Aip06g00130 144 SUPERFAMILY beta-beta-alpha zinc fingers 15 45 IPR036236 -
Aip06g00130 144 Gene3D Classic Zinc Finger 6 75 - -
Aip06g00130 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Aip06g00130 144 Pfam C2H2-type zinc finger 18 42 - -
Aip06g00130 144 MobiDBLite consensus disorder prediction 91 134 - -
Aip06g00130 144 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 128 - -
Aip06g00130 144 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Aip06g00130 144 MobiDBLite consensus disorder prediction 91 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00130 Aip-Chr6 1262628 1263180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00130 18 46 C2H2 Transcription Factor Family AT5G43540 82.759 1.19e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g00130 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00130 - - aip:107647878 267.314