Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00126 ATGGCTTGTTCAAGTGGAAATGGAACAAGTAGTGGTGGGTCAGGTTCACCGTGTGGGGCGTGCAAGTTTCTGAGGAGGAAGTGTGCTGCAGATTGCATATTTGCACCATACTTCTGCTCAGAACAAGGGCCTGCAAGATTTGCAGCCATACATAAGGTGTTTGGTGCAAGCAACGTTTCCAAGCTCTTGCTTCATATTCCCGCTCATGATCGCTGTGAGGCTGTTGTCACCATTGCTTATGAGGCTCAAGCTCGTATCAGAGACCCCGTTTATGGTTGCGTCTCTCACATTTTCGCATTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAGGCTCAGCTGGCACAGAATCAAATGGAATCTTGTAGGAACATAGAGAATCAATGGCCAGGGAATGTTGGTGGAGCCATCAACAACAATAATAACAATCCATTTGGTCACACCAATTACATGAACCCTCCTATATCTCCTCAGAGTTCACTTGAATCAATTGATCATCACAGCAGCAGCATCATTGATGGAGTTGCAAATAATAATATGCATGACACAAGACCAGAGGATTTCAACTCATTCCAACAACAACAACAACAAGCTTCTTCTAAGAGAAGATCATATAACAACAACAACAACAACAATGACCTGGGTGAGCTGCAAGAGTTGGCACTTAGGATGATGAGGAACTAA 696 0.4411 MACSSGNGTSSGGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNQMESCRNIENQWPGNVGGAINNNNNNPFGHTNYMNPPISPQSSLESIDHHSSSIIDGVANNNMHDTRPEDFNSFQQQQQQASSKRRSYNNNNNNNDLGELQELALRMMRN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00126 231 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Aip06g00126 231 Coils Coil 97 124 - -
Aip06g00126 231 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Aip06g00126 231 MobiDBLite consensus disorder prediction 148 231 - -
Aip06g00126 231 MobiDBLite consensus disorder prediction 148 220 - -
Aip06g00126 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 230 - -
Aip06g00126 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 10 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00126 Aip-Chr6 1223468 1225131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00126 4 231 AS2 family AT2G42430 55.422 9.96e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip06g00126 LOB 1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00126 K13944 - gmx:100801508 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00126 06 1223468 1225131 Aip06g00126 06 1223468 1225131 ECH
Aip06g00126 06 1223468 1225131 Aip02g00917 02 15519721 15521405 PCT