Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00125 ATGACAGGTTCAGGTACACCTTGTGGAGCCTGCAAATTCTTGAGGAGAAAATGCGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCCAAGCTCCTTGCTCATCTTCCTGTCGCCGATCGCTGCGAAGCCGCCGTCACCATCTCATTCGAAGCTCAGGCAAGGCTTCAAGATCCAATCTATGGCTGCGTCGCACATATTTTTGCCCTACAACAACAGGTGATGAATTTACAAGCACAGTTGGCTTATTTAAGGGAACAAGCTGCAGAGAGTTGTAATCTGAACCCTAATAATACTACTGCTCTTTACCCCAATCACCAAGATCTTGGAAATTCGTTCCAGATGGAAAATTCCACCATGGTTCCACAGTTTCTTTCTGATAGTTCATCTAATTATCCCTCATCAGCAACACAACAATACCATGGGAATACTCGTAGTAGTCTCATCATGATGGAATCAAACCCTATTGAGAACTATGAAAATTCAAGCATCTCCTTTGATGAGACTTGTGACACGGTGTTCTTTGACATGAAAAGACTGTGGCCCTCTCAACTTCAATAA 621 0.4316 MTGSGTPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVADRCEAAVTISFEAQARLQDPIYGCVAHIFALQQQVMNLQAQLAYLREQAAESCNLNPNNTTALYPNHQDLGNSFQMENSTMVPQFLSDSSSNYPSSATQQYHGNTRSSLIMMESNPIENYENSSISFDETCDTVFFDMKRLWPSQLQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00125 206 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Aip06g00125 206 Coils Coil 87 107 - -
Aip06g00125 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 183 - -
Aip06g00125 206 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Aip06g00125 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00125 Aip-Chr6 1213232 1214109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00125 7 168 AS2 family AT3G58190 60.116 1.87e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip06g00125 LOB 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00125 K13945 K13944 gmx:100816960 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00125 06 1213232 1214109 Aip06g00125 06 1213232 1214109 ECH
Aip06g00125 06 1213232 1214109 Aip02g00924 02 15613565 15615211 PCT