Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00121 ATGGCATTGAACCACAACCACACTCACTTTGAAGAATATCAACATCAACCTTCATCAGATTCTTCTCTACTCATATTTGTTATTGTCCTGCCTCTCATACCGCCCACACTTTTCATACTCATTACCTACTTATCTTTTGTTACAAAATGCTGCTCAAATTGCCACCATGTTAACCCTCTAAGATGGATCTCCTTCCTGCGGATGCATCCGCATCCACACGATGAAGATCCCTTCATAGCATTCTCTCCAAGGATCCTCAACCTTGGCTTAGATGAATCTTCCATCCAAGAAATCCCAGCATTTCAATTCACAAAAGATTTTCAAAGCATCTCTGCCTGTGTGGTTTGTTTGACAGAGTTTCAAGAAAGGGAAATGCTCAAAGTTCTTCCAAATTGCAACCATGCATTTCACTTGGATTGCATTCATATTTGGCTTCAAACCAATGCAAATTGCCCTCTCTGCAGAACAAGTATCTCCGGCAACACGCAGCTTCCAACTGACCGTATCATAGCCCCCAGTTCTTCCCCTCAGGACTCTCACTTGCTCTCTAACATGGCAAGTGATGAAGATTTTGTGGTCATTGAAGTTGGAGCAGAACATGAAGGAATTACAACACTGCCACAGATGCAGCAACAAGTGATGAATAATGACTCAGGGGAAAGCATAGCACACAGTAGGAGTTACTCTAGCTTTGCAAGGAAGAAACCATGGAAGTGCCACCATGTTTCAATAATGGGAGATGAGTGCATTGATGTTGGAAAGAAAGATGATCAATTCTCTTCTCTTCAGCCTATTAGAAGATCCTTTTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCATTATTCATCAAAATAGGCATAATCAGAATCATGCTAGTGCCAGTGAAGATTGTAATAGCAGAACCAGAAGATCATTCTTTCCATTCCGTTATTGCCGTGGATCCAAAAGTGCAATCATTCCTCTGGAAAATGAGGTTTAA 996 0.4106 MALNHNHTHFEEYQHQPSSDSSLLIFVIVLPLIPPTLFILITYLSFVTKCCSNCHHVNPLRWISFLRMHPHPHDEDPFIAFSPRILNLGLDESSIQEIPAFQFTKDFQSISACVVCLTEFQEREMLKVLPNCNHAFHLDCIHIWLQTNANCPLCRTSISGNTQLPTDRIIAPSSSPQDSHLLSNMASDEDFVVIEVGAEHEGITTLPQMQQQVMNNDSGESIAHSRSYSSFARKKPWKCHHVSIMGDECIDVGKKDDQFSSLQPIRRSFSMDSANDRQVYLDVQAIIHQNRHNQNHASASEDCNSRTRRSFFPFRYCRGSKSAIIPLENEV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00121 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
Aip06g00121 331 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 328 - -
Aip06g00121 331 Pfam Ring finger domain 112 155 IPR001841 -
Aip06g00121 331 SMART ring_2 113 154 IPR001841 -
Aip06g00121 331 SUPERFAMILY RING/U-box 107 161 - -
Aip06g00121 331 PANTHER RING-H2 FINGER PROTEIN ATL16 6 328 IPR044600 GO:0016567|GO:0016740
Aip06g00121 331 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00121 Aip-Chr6 1152941 1153936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00121 13 292 C3H Transcription Factor Family AT1G04360 41.158 4.44e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00121 K19041 - gmx:100809883 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00121 06 1152941 1153936 Aip06g00121 06 1152941 1153936 ECH