Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00120 ATGGAGGGAGAGAGACACTACAGAGGGATTCGTAGGAGGCCATGGGGCAAATTCGCTGCTGAGATTAGAGACCCAACCAGGAAAGGGACTCGTATTTGGCTTGGTACCTTTGACACTGCTGAACAAGCTGCTAGAGCCTATGATGCTGCTGCTTTCCATTTTCGTGGTCATAGAGCCATTCTCAATTTCCCAAATGACTATGTCGCTGCTTCTTCTTCCGGTTCTTCTAGAAGATCACAACAACAGCAAGAACATATGCATCAACTTGATCACTACACTACTACCACTTCTTTTGAGTTGGAATACTTTGACAATAAGTTGTTGGAAGAACTCCTTCAGGGGCAAGATGCTACTACACGCACATCCCTACCTAGCTAG 378 0.4577 MEGERHYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNDYVAASSSGSSRRSQQQQEHMHQLDHYTTTTSFELEYFDNKLLEELLQGQDATTRTSLPS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00120 125 PANTHER DNA-BINDING DOMAIN 5 82 IPR044808 GO:0003700|GO:0009873
Aip06g00120 125 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 5 82 - -
Aip06g00120 125 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Aip06g00120 125 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Aip06g00120 125 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
Aip06g00120 125 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Aip06g00120 125 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Aip06g00120 125 MobiDBLite consensus disorder prediction 69 91 - -
Aip06g00120 125 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aip06g00120 125 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Aip06g00120 125 Pfam AP2 domain 6 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00120 Aip-Chr6 1148894 1149273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00120 7 116 AP2-EREBP Transcription Factor Family AT3G23230 53.846 1.91e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g00120 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00120 - - adu:107493082 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00120 06 1148894 1149273 Aip06g00120 06 1148894 1149273 ECH
Aip06g00120 06 1148894 1149273 Aip02g00967 02 17044616 17045217 PCT