Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00106 ATGACAGATGCTGAAGACGCCGTACGACGTCGTAACGCGGTGGCGGATTATCGAAAGAAGCTCCTCCAGCACAAGGAATTGGAGTCCAGAGTTCGATCAGTGAGAGAGAATTTGCGAGCTTCGAAGAAAGAGTTCAATAAAACGGAGGATGACTTGAAGTCTCTTCAAAGCGTTGGCCAGATCATTGGGGAAGTTCTCAGGCCTCTTGACAATGAACGCTTGATTGTTAAAGCAAGCAGCGGACCAAGGTATGTGGTAGGATGCCGGAGTAAAGTTGATAAGGAAAAATTGACTTCCGGTACACGAGTGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCACGTGAAGTTGATCCGGTTGTTTACAATATGCTGCACGAGGATCCCGGTAATGTGAGTTATTCCGCTGTTGGTGGTCTCTCTGATCAGATAAGGGAATTGAGGGAATCAATTGAATTGCCTCTGATGAATCCAGAACTTTTTCTTCGTGTTGGAATTAAACCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACGGGTAAAACACTGTTAGCTAGGGCAATTGCCAGTAATATCGATGCTAATTTCTTGAAGGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCAAGGTTGATACGAGAAATGTTTGGGTATGCACGTGATCACCAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGCCGTTTTAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTGATGGAGTTGCTTAATCAACTAGATGGATTTGATCAACTTGGAAAGGTTAAAATGATAATGGCAACGAACAGACCCGATGTACTGGACCCTGCTCTTCTACGTCCTGGAAGGTTGGATAGGAAAATAGAAATTCCATTGCCAAATGAACTATCGAGGATGGAAATTCTCAAGATTCATGCTGCTGGGATTGCTAAGCATGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAATGTCCGCAATCCGTGCAGAGCGCGACTATGTGATCCATGAAGATTTTATGAAGAACAATAATTTGACTTCATTCTTCTGTTTCAGGCTGTTCGAAAACTGA 1170 0.4427 MTDAEDAVRRRNAVADYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNELSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKNNNLTSFFCFRLFEN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00106 389 SMART AAA_5 171 310 IPR003593 -
Aip06g00106 389 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Aip06g00106 389 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 377 IPR027417 -
Aip06g00106 389 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 22 375 IPR005937 GO:0005737|GO:0030163|GO:0036402
Aip06g00106 389 PANTHER BNAC02G30020D PROTEIN 2 375 - -
Aip06g00106 389 Pfam AAA+ lid domain 331 373 IPR041569 -
Aip06g00106 389 Gene3D - 128 308 IPR027417 -
Aip06g00106 389 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Aip06g00106 389 CDD AAA 141 308 - -
Aip06g00106 389 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Aip06g00106 389 Gene3D - 23 127 IPR012340 -
Aip06g00106 389 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 2 375 - -
Aip06g00106 389 Coils Coil 24 58 - -
Aip06g00106 389 Gene3D - 309 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00106 Aip-Chr6 1000797 1003607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00106 134 374 Miscellaneous Gene Families AT3G47060 39.431 1.39e-52 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00106 K03064 - gmx:100788475 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00106 06 1000797 1003607 Aip06g00106 06 1000797 1003607 ECH