Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00043 ATGGGTTTTTTTAGTACCATAGGTACTTGTTTTGGCTTTGGAATTGGAACTTCAATTGGTGTGGTCATTGGATACTATGTGTTTATATACTTTCAGCCAACACATGTCAAGGATCCCATAATTCGTCCTTTGGCCGAGCAAGATGCCAAAACTCTGCAACAAATGCTTCCAGAGATACCATTGTGGATAAAGAATCCAGATTTTGATCGTCTTGACTGGCTCAATAGATTTGTTGAGCATTTGTGGCCTTATCTAGACAAGGCAATTTGCAAGACTGCAAGGACTATAGCAAAGCCCATTATTGCTGAGCAAATTCCCAAGTACAAGATTGATTCAGTAGAATTCGAAACGCTTACCTTGGGTTCTCTACCTCCAACTTTTCAAGGAATGAAAGTCTACAATACTGATGAAAAGGAGTTAATTATGGAACCATCAGTAAAATGGGCTGGGAATCCTAACATTATAGTTGCAATCAAAGCATTCGGCTTGCGAGCCACAGTTCAGGTTGTTGATCTGCAAGTATTTGCCTCTCCACGAATTACATTGAAGCCTTTAGTCCCAAGTTTTCCTTGCTTTGCAAATATTTATGTGTCGCTCATGGAGAAGCCACATGTTGACTTTGGATTAAAACTTCTTGGAGCTGATGTCATGTCTATTCCTGGTGTTTATAGGCTTGTCCAGGAAATCATCAAAGAACAGGTTGCAAAAATGTACTTATGGCCTAAGGCCCTTGAGGTGCAGATAATGGATCCAACAAAGGCCATGAAAGTACCTGTAGGAATCCTCCATGTGAAGGTTCTTAGAGCAACAAATCTCAAGAAGAAAGATCTACTCGGAGGAGCAGACCCGTACGTGAAGCTTAAACTCTCTGAAGACAAACTTCCTTCAAAGAAAACTACTGTGAAATATAAGAAATTGAATCCAGAATGGAATGAGGAATTCAATATGGTTGTCAAAGATCCGGAATCTCAATTCTTGGAACTTAGTGTTTATGATTGGGAGCAGATTGGGAAGCATGACAAGATGGGAATGAATGTGATTCAATTGAAAGAGCTTACAGCGGACGAAGCGAAAGAGCTGACTCTTGATTTACACAAGACTATGGAGCCTAATGATCCAGAAAATGAGAAGTCAAGGGGAGAGATCACAGTACAAGTTCTGTATAAGCCTTTTAAAGATGATGAGTTGGCTCAGAATTCAGAGGACCCTAATGCAATAGAAAAGGCTCCTGAAGGAACACCTGCCACTGGTGGTTTGCTTGTTATTATCATCCATGAAGCTGAAGATGTTGAAGGGAAACACCACACAAATCCATATGCAAGACTCATTTTCAAAGGAGAGGAGAGGAAAACCAAGGTGTTATTTATTTTCTTATTCTATTTAGAATGA 1389 0.3996 MGFFSTIGTCFGFGIGTSIGVVIGYYVFIYFQPTHVKDPIIRPLAEQDAKTLQQMLPEIPLWIKNPDFDRLDWLNRFVEHLWPYLDKAICKTARTIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYNTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADVMSIPGVYRLVQEIIKEQVAKMYLWPKALEVQIMDPTKAMKVPVGILHVKVLRATNLKKKDLLGGADPYVKLKLSEDKLPSKKTTVKYKKLNPEWNEEFNMVVKDPESQFLELSVYDWEQIGKHDKMGMNVIQLKELTADEAKELTLDLHKTMEPNDPENEKSRGEITVQVLYKPFKDDELAQNSEDPNAIEKAPEGTPATGGLLVIIIHEAEDVEGKHHTNPYARLIFKGEERKTKVLFIFLFYLE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00043 462 CDD C2 262 364 - -
Aip06g00043 462 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 453 - -
Aip06g00043 462 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Aip06g00043 462 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 453 IPR045050 GO:0008289
Aip06g00043 462 Gene3D C2 domain 257 412 IPR035892 -
Aip06g00043 462 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Aip06g00043 462 PRINTS C2 domain signature 304 317 IPR000008 -
Aip06g00043 462 PRINTS C2 domain signature 326 334 IPR000008 -
Aip06g00043 462 PRINTS C2 domain signature 277 289 IPR000008 -
Aip06g00043 462 SMART C2_3c 261 361 IPR000008 -
Aip06g00043 462 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 370 454 IPR035892 -
Aip06g00043 462 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Aip06g00043 462 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 392 IPR035892 -
Aip06g00043 462 Pfam C2 domain 260 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00043 Aip-Chr6 351768 355512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00043 259 352 C2H2 Transcription Factor Family AT4G05330 38.947 1.77e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00043 - - aip:107645319 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00043 06 351768 355512 Aip06g00043 06 351768 355512 ECH