Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00042 ATGGAAGAACTGGAGCTTGCTTCTTCAGGTTCTCGTTTGGAAAAAGGACAAACAACATCATCTTTTAAGATGGATCAACAAAAAGATTCAAAATCAAACCAAATGGAGAGTGTTTCCTTCTTTGGCTTGTTTGCTGCAGCTGATTCAGTTGACTATGTGTTAATGTTCCTAGGAAGTGTTGGTGCTTGTGTTCATGGTGCTGCTCTGCCTCTCTTCTTTGTTTTGTTTGGTCGCATGATTGATTCTTTGGGACATCTTAATAGGGATCCTCACAAATTGTCATCACGGGTTTCTGAGCATGCTTTGTACTTGGTATATCTTGGACTTCTTGTTATGGTATCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACCGGTGAGAGGCAAACGGCTCGGTTGCGCTTAAATTACTTGAGGTCAGTGCTAAAGAAGGACATTAATTTCTTTGACAATGAAGCCAGAGATGCTAATATCATTTTCCACATCTCAAGTGATGCAATTTTGGTACAAGATGCAATAGGCGACAAGACAGGCCATGCCATACGTTACCTATCTCAATTCATTGTTGGATTTGGCATTGGATTCACATCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTGTAGCAGGAGGAGCTTATACAATTATTATGTCTACTCTCTCAGAAAAGGGTGAAGCAGCATATGCTGAAGCTGGCAAGGTGGCAGAAGAGGCAATATCTCAAGTGCGCACCGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTGGCACATACTCTAAGTCACTTGACAAAGCTCTTAAGATGGGGAAGAAGAGTGGTTTTGCAAAAGGAATTGGTGTTGGTTTTACGTATGGCCTATTGTTTTGTGCTTGGGCATTGCTTCTATGGTATTCTAGCATACTTGTGAGGCATCACAAGACAAATGGAGGGAAAGCATTTACAACTATCATCAATGTCATCTTTAGTGGATTTGCGCTTGGCCAAGCTGCTCCAAGCCTTGGTTCCATTGCTAAAGGGCGTGCTGCCGCAGCGAATATCATGAACATGATTGCGTCTGCTTCGGACGTGGCAAAAAGGTTGGATGACGGCACTGTTCTGCAACAAGTGGAAGGGAAAATTGAATTCTCTGAGGTCTGCTTTGCTTACCCTTCAAGGTCCAATATGGTCTTTGAAAATTTGAGCTTCTTAGTCAGTGCTGGGAAGACTATAGCAGTTGTTGGTCCTAGTGGTTCAGGAAAGAGCACAATCATTTCCATGATTCAACGATTTTATGATCCTACTTCAGGTAAGATCCTGTTGGATGGATATGACTTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGACTGGTAAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGCAACATTTTATTTGGAAAAGAAGGTGCTGACATGGATCAGATCATACAAGCTGCCAAGGCTGCAAATGCTCATTCCTTCATTGAAGGATTACCTGATGGTTATAATACTCAGGTTGGAGAAGGTGGCACCCAACTTTCTGGAGGACAGAAGCAGAGAATTGCTATAGCTAGAGCAGTTCTCAGAAACCCAAAAATATTGCTTTTAGATGAAGCCACCAGTGCTTTAGATGCTGAATCAGAACTCATAGTGCAGCAGGCATTGGAAAAAATAATGTCAAACCGGACAACAATAATTGTTGCGCATAGATTATCTACCATACGCGATGTAGATACAATTATTGTGTTGAAGAATGGTCAAGTTGCTGAGAGTGGTACTCATTCAGAACTGATGCTGAAAAATGGGGATTATGTGAGTCTGGTGAGCATCCAGGAATCACAGAATTTCACACACTCTAGCTCAATATCACGCTCTGGAAGTTCAAGGAACTCCAGCTTTAGAGAACCTTTTGACAGTAGGAACTATCAAGATGTGAACACAGAAAGAGAGCTTCAGTCAAGTGATCAAGGCATGCCATTGAATGCGGCTTCTGTTCCGTCCATTTTGGACTTACTGAGACTGAATGCTCCAGAGTGGCCTTATGCAGCACTTGGTTCCATTGGTGCCATTCTGGCTGGAATGGAGGCTCCTCTCTTTGCCCTTGGAATCACACATATTCTGACTGTATTTTACTCTGGTTCTAAAATCAAGCAAGAAGTTGATCGGATAGCGATAGCATTTGTCGGATTGGCTGTTATAACTATACCTATTTACCTATTGCAACATTACTTTTATACTCTGATGGGAGAGCGCCTCACCGCCCGTGTGCGCTTATTAATGTTCTCAGCTATCCTTACAAATGAGATCGCATGGTTCGACATGGATGAGAACAACACTGGTTCAATAACAGCCATGCTAGCTGCAGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGAATCTCTACCATTGTGCAAAATGTAGCTCTCACCGCAACAGCATTTGCCATTGCCTTCACACTCAGTTGGAAACTCACTTGTGTGGTTGTAGCATGCCTCCCCCTACTCATAGGGGCTTCTATCACAGAGCAACTGTTTCTCAAGGGATTTGGAGGAGACTATAGTCATGCATACTCTAGAGCAATTTCTTTGGCAAGGGAAGCTATTGCCAACATACGTACCGTGGCTGCTTTTGGAGCAGAAGATCGTATCTCAATTCAGTTTTCCTGTGAGTTGAACAAGCCCAACAAGCAAGCACTTTTAAGAGGCCACATATCAGGTATCGGCTATGGTGTTACACAGCTGTTTGCTTTCTGTTCCTATGCGCTTGGACTTTGGTATGCATCCCTTTTAATCAAGCAGAAGGACTCAAATTTCGGAGATGTCATGAAATCTTTCATGATCTTGATCATCACTGCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATCGTGAAGGGATCGCAAGCGTTAGGATCAGTTTTCAGCATTCTCCAAAGGAAAACAGCAATAAGCCCCGACAACCCCAACTCCAAGATGGTAACGGATATCAAAGGAGATATAGAGTTTAGAAATGTGTGCTTCAACTATCCAATGAGACCTGATATCCCCATATTTCAGAACTTAAATCTCAAAGTCTCCGCAGGAAAGAGTCTTGCAGTAGTAGGACAAAGTGGTTCGGGGAAGAGTACTGTGATTTCTCTGGTAATGAGATTTTATGACCCCATTTCTGGGTCTGTTCTAATCGATGAATCCGATATCAGAAGCCTAAACTTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAGCCAGCTTTGTTTTCGACTACACTTTACGAAAACATCAAGTATGGAACTGAGGAGGCATCAGAGATAGAGGTAATGAAAGCAGCAAGAGCAGCTAATGCTCATGAATTCATTAGTAGAATGCCAGATGGGTACAGAACTCAAGTTGGTGAAAGAGGGGTGCAGTTATCAGGAGGACAGAAACAAAGAGTGGCTATTGCTAGAGCTATTCTGAAGAATCCATCCATTCTTCTATTGGATGAGGCGACAAGTGCGCTTGACACGGTGTCAGAGAGGCTTGTCCAAGAGGCTCTTGATAAACTTATGGAAGGAAGAACTACAATTTTGGTAGCTCACAGGTTGTCAACTGTTAGAGATGCAAACAACATTGCAGTGCTACAAAATGGGAGGGTTGCTGAAATGGGGAGCCATCAGAGGCTGATTTCAAAACCAGGAAGCATCTACAAGCAATTGGTTAGTCTACAGCAAGAGAAGCATGGCCAAGGCCATTAA 3762 0.4298 MEELELASSGSRLEKGQTTSSFKMDQQKDSKSNQMESVSFFGLFAAADSVDYVLMFLGSVGACVHGAALPLFFVLFGRMIDSLGHLNRDPHKLSSRVSEHALYLVYLGLLVMVSAWMGVAFWMQTGERQTARLRLNYLRSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFGIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAEEAISQVRTVYSFVGEEKAVGTYSKSLDKALKMGKKSGFAKGIGVGFTYGLLFCAWALLLWYSSILVRHHKTNGGKAFTTIINVIFSGFALGQAAPSLGSIAKGRAAAANIMNMIASASDVAKRLDDGTVLQQVEGKIEFSEVCFAYPSRSNMVFENLSFLVSAGKTIAVVGPSGSGKSTIISMIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEGADMDQIIQAAKAANAHSFIEGLPDGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMSNRTTIIVAHRLSTIRDVDTIIVLKNGQVAESGTHSELMLKNGDYVSLVSIQESQNFTHSSSISRSGSSRNSSFREPFDSRNYQDVNTERELQSSDQGMPLNAASVPSILDLLRLNAPEWPYAALGSIGAILAGMEAPLFALGITHILTVFYSGSKIKQEVDRIAIAFVGLAVITIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEIAWFDMDENNTGSITAMLAADATLVRSALADRISTIVQNVALTATAFAIAFTLSWKLTCVVVACLPLLIGASITEQLFLKGFGGDYSHAYSRAISLAREAIANIRTVAAFGAEDRISIQFSCELNKPNKQALLRGHISGIGYGVTQLFAFCSYALGLWYASLLIKQKDSNFGDVMKSFMILIITALAIAETLALTPDIVKGSQALGSVFSILQRKTAISPDNPNSKMVTDIKGDIEFRNVCFNYPMRPDIPIFQNLNLKVSAGKSLAVVGQSGSGKSTVISLVMRFYDPISGSVLIDESDIRSLNLRSLRLRIGLVQQEPALFSTTLYENIKYGTEEASEIEVMKAARAANAHEFISRMPDGYRTQVGERGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDANNIAVLQNGRVAEMGSHQRLISKPGSIYKQLVSLQQEKHGQGH 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00042 1253 MobiDBLite consensus disorder prediction 11 29 - -
Aip06g00042 1253 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 461 577 - -
Aip06g00042 1253 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 38 480 - -
Aip06g00042 1253 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 557 1245 - -
Aip06g00042 1253 SUPERFAMILY ABC transporter transmembrane region 675 986 IPR036640 GO:0005524|GO:0016021
Aip06g00042 1253 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 990 - -
Aip06g00042 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 344 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00042 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1245 IPR027417 -
Aip06g00042 1253 Gene3D - 997 1252 IPR027417 -
Aip06g00042 1253 Pfam ABC transporter transmembrane region 691 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00042 1253 Pfam ABC transporter transmembrane region 56 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00042 1253 SMART AAA_5 1034 1220 IPR003593 -
Aip06g00042 1253 SMART AAA_5 405 591 IPR003593 -
Aip06g00042 1253 Gene3D - 369 616 IPR027417 -
Aip06g00042 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 614 IPR003439 GO:0005524
Aip06g00042 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 38 480 IPR039421 -
Aip06g00042 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 557 1245 IPR039421 -
Aip06g00042 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 461 577 IPR039421 -
Aip06g00042 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 615 IPR027417 -
Aip06g00042 1253 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524
Aip06g00042 1253 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Aip06g00042 1253 CDD ABC_6TM_Pgp_ABCB1_D1_like 55 352 - -
Aip06g00042 1253 CDD ABC_MTABC3_MDL1_MDL2 379 615 - -
Aip06g00042 1253 SUPERFAMILY ABC transporter transmembrane region 49 352 IPR036640 GO:0005524|GO:0016021
Aip06g00042 1253 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524
Aip06g00042 1253 Gene3D ABC transporter type 1, transmembrane domain 42 976 IPR036640 GO:0005524|GO:0016021
Aip06g00042 1253 MobiDBLite consensus disorder prediction 622 643 - -
Aip06g00042 1253 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Aip06g00042 1253 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Aip06g00042 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip06g00042 1253 MobiDBLite consensus disorder prediction 1 29 - -
Aip06g00042 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1243 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00042 Aip-Chr6 335219 340892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00042 28 1251 Calmodulin-binding Proteins AT2G36910 49.722 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00042 K05658 - gmx:100787093 2009.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00042 06 335219 340892 Aip06g00042 06 335219 340892 ECH