Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00036 ATGGTTAACACAACGGAATCTTCCTCTAACCACCACTCCCCGCCGATGACGGCGGTGCCACCTGAATCCGACAGCCCCAAGTTCCCGCGAAAAAATCTCCCTTCTCCATGGGCTCAGGTTGTCCGCGGCGCCGAGCCTGAATCCACTGCCGGGACTCCCCAATCGCCGCCGCCACCGCCACCATCGTCTGCCTCCTCCTCCTCCTCCCTTGCTGCCAGCGTCGCGTCAGTCCCGGAGCAGCTGCCTTCTTCAGATTCCTCCTCCCCAAAGGCAGTAGCTGTCTCGCCGCCGGTGGACAACAGGAGTGTTGTGGCAGCTCCTCCCGATAGCTCCGATGGCGGTGAGGGCAATGCGGGTAGGTCTAAGAAACCCGCTTGGAACAAGCCTTCAAACGGCGTCGTATCTGAGGCCGGTCTTGTGATGGGAGGGTCATGGCCTGCTCTGTCTGAATCTACCAAAGGGACTCCCAAATTGGCGGCTGAACCATCTTCCAAGACTGCCTTAGATGCATCGCTCTCCACATCTCAGGGTCCTGTAACTTCGAACTCTCCCCAAAGACAAGCTACTAGCCATGCAAAACCCAACTCTGCAACAACTTATAACATACCTAATAGGCAAAGACCAATGAAGCGTGGAGGTGGCAGCAGCGTTGGGTCTGGTCCTTCTTCAAGCGGCTTTCCCAATGTTGCGCCACCTCCACCGCCCTTTCCTGTATACCCAGTTCCTGCACCTGCAATTGGTTACGGTAATGTCATGCCGGGAGCTCCAGACCATTCTCCAAGAGATCATTATCGTCGTAATACCTGGGATGCAAGACCACCTGTTGGGAATTTTGTGCCTCCAATGACTGAACATCGGGGTTCATCTCGCCGGGGTAATTTTGGGTCCCATCCTAGGGGAGATGGCTCCTATCATAATAATTATGGTAGTAGGCGTGATCATGATCGTGCCAATTATGGGAATGCTAGAGATGCTCATGTACACCAACCAGGGGGAATATTGAGGCACCCACCACCGAATGCTCCTTCATTTGTTAACCCTGCACATGTTGGATCCTCACCCTATGCTAACCACATGGGCTTCCATGACTTATTATATGTTTCACCAGTACAAGTAGATCCCATGAGGAGCATGCCATTCTTTCCTTCCACTCCTACTCCTCCTTCTCCTCCTCCTCCTCCTACGATGTTCTTCCATGCAGAAACTTCTTCTCCTCTTAACAATATGATTATCAAGCAAATTGAATACTACTTTAGTGATGCTAATTTAGTAAAAGATGAATATTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCCATTACGTTGATAGCAAACTTTCCTCGCGTTAAAAATTTAACAAGTAACATCCCATTGATACTGGATTCATTAAGAGGTTCAGCTATTGTTGAAGTGCAAGGTGACAAGCTAAGGAGGCATAATGAGTGGATGAGATGGCTGCCAGCTGCTCATCTTCGGTCAGATTCCAGTTCAATATCTACTGGTGGACCAAATTTCAATAACCTTGCAGCTAATTTTCAAACAATCACCTTGGAAGAAGCAGCTAAAATTGAAGAGGTTGCATGGAAGTTAATCCTTCCTACGGTTGCTGAGTTCGATTTTGATCGTAATTGA 1635 0.496 MVNTTESSSNHHSPPMTAVPPESDSPKFPRKNLPSPWAQVVRGAEPESTAGTPQSPPPPPPSSASSSSSLAASVASVPEQLPSSDSSSPKAVAVSPPVDNRSVVAAPPDSSDGGEGNAGRSKKPAWNKPSNGVVSEAGLVMGGSWPALSESTKGTPKLAAEPSSKTALDASLSTSQGPVTSNSPQRQATSHAKPNSATTYNIPNRQRPMKRGGGSSVGSGPSSSGFPNVAPPPPPFPVYPVPAPAIGYGNVMPGAPDHSPRDHYRRNTWDARPPVGNFVPPMTEHRGSSRRGNFGSHPRGDGSYHNNYGSRRDHDRANYGNARDAHVHQPGGILRHPPPNAPSFVNPAHVGSSPYANHMGFHDLLYVSPVQVDPMRSMPFFPSTPTPPSPPPPPTMFFHAETSSPLNNMIIKQIEYYFSDANLVKDEYLRSNMDEQGWVPITLIANFPRVKNLTSNIPLILDSLRGSAIVEVQGDKLRRHNEWMRWLPAAHLRSDSSSISTGGPNFNNLAANFQTITLEEAAKIEEVAWKLILPTVAEFDFDRN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00036 544 Gene3D - 398 487 IPR036388 -
Aip06g00036 544 MobiDBLite consensus disorder prediction 1 229 - -
Aip06g00036 544 SUPERFAMILY "Winged helix" DNA-binding domain 398 488 IPR036390 -
Aip06g00036 544 SMART la 404 480 IPR006630 -
Aip06g00036 544 MobiDBLite consensus disorder prediction 1 16 - -
Aip06g00036 544 MobiDBLite consensus disorder prediction 306 322 - -
Aip06g00036 544 Pfam La domain 410 465 IPR006630 -
Aip06g00036 544 PANTHER LUPUS LA PROTEIN-RELATED 48 523 IPR045180 -
Aip06g00036 544 ProSiteProfiles La-type HTH domain profile. 400 489 IPR006630 -
Aip06g00036 544 CDD LAM 408 479 - -
Aip06g00036 544 PANTHER LA-RELATED PROTEIN 1B 48 523 - -
Aip06g00036 544 MobiDBLite consensus disorder prediction 252 347 - -
Aip06g00036 544 MobiDBLite consensus disorder prediction 65 93 - -
Aip06g00036 544 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00036 Aip-Chr6 273145 276810 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00036 K18757 - gmx:100785504 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00036 06 273145 276810 Aip06g00036 06 273145 276810 ECH
Aip06g00036 06 273145 276810 Aip07g02395 07 100549324 100551894 PCT