Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00031 ATGGCAAAATTTATTCTTGTTTTGGCCACCTTCATTGGATTATGCAGTTTCACATATGCTTTCTCAGCTTCAAGTTGGACCAATGCCCATGCCACCTTCTATGGGGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATGCAACTGGGTATGGGACGAGAACTGCGGCTTTGAGCACAGCCTTGTTCAATGATGGAGCCTCATGCGGAGAATGCTACAAGATCATCTGTGATTACAAAGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACAAACTTTTGCCCTCCTAACTTTGATCTTCCCAATAACAATGGAGGGTGGTGCAACCCACCTCTGAAGCACTTTGATATGGCTCAACCAGCATGGGAAAAGATTGGCATCTACAGAGGAGGCATCGTCCCCGTCCTGTTCCAAAGGGTGCCATGCAAGAAGCATGGAGGGGTTAGATTCAGCATAAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAATGTGGGAGGTGCTGGATCCATCCAATCAGTGTCCATAAAGGGATCAAAAAGTGGGTGGATGGCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATGCATATTTGAATGGCCAATCTTTGTCATTCAGGGTCACTACTACTGATGGAGAAACTAAGCTTTTCAATGACATTGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTGTTCAGTTCTCATAA 762 0.458 MAKFILVLATFIGLCSFTYAFSASSWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFDLPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSINGRDYFELVLISNVGGAGSIQSVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGETKLFNDIVPSNWGFGQTFSSPVQFS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00031 253 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Aip06g00031 253 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Aip06g00031 253 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Aip06g00031 253 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Aip06g00031 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Aip06g00031 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip06g00031 253 Gene3D - 14 155 IPR036908 -
Aip06g00031 253 PANTHER EXPANSIN 5 252 - -
Aip06g00031 253 Gene3D - 159 253 IPR036749 -
Aip06g00031 253 Pfam Lytic transglycolase 61 148 IPR009009 -
Aip06g00031 253 SUPERFAMILY Barwin-like endoglucanases 17 177 IPR036908 -
Aip06g00031 253 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Aip06g00031 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 159 IPR007112 -
Aip06g00031 253 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Aip06g00031 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Aip06g00031 253 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Aip06g00031 253 SMART dpbb_1 61 149 IPR007112 -
Aip06g00031 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Aip06g00031 253 PANTHER EXPANSIN-A15 5 252 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00031 Aip-Chr6 249499 250405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00031 61 252 Expansin Gene Family AT1G20190 82.812 4.90e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00031 - - gmx:548040 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00031 06 249499 250405 Aip06g00031 06 249499 250405 ECH
Aip06g00031 06 249499 250405 Aip07g02390 07 100404290 100406483 PCT