Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00029 ATGCTGGACTCAGTTCTGCTGGCGCTGTTCCTGCCGTGCCTGGGCATGAGCGCCGTCTTCATAGTGTACATCTGCCTTCTCTGGTACGCCACCGCACACCATCCCAACCTCCCTCCGCCCCCAGCCAAAACCCTCTCCGTGAAGGGCCTCTCCCCCTCCGACCTTGACAAGCTCCCCAAGGTTACCGGCAAGGACCTGCTGTCCCCTAGCGAATGTGCAGTGTGCCTCGATGACATCGCCCACGAACAAGCTGTTCGGATGGTTCCCGGTTGCAACCATGGCTTTCACCTTGAATGCGCGGATACCTGGCTCTCAGAACACCCTCTGTGTCCGGTTTGTAGAGCCAAACTTGACCTTGAGAATTTGAATTCCTCTGAAAGTGAAAAGAATCCATGCTAA 399 0.5614 MLDSVLLALFLPCLGMSAVFIVYICLLWYATAHHPNLPPPPAKTLSVKGLSPSDLDKLPKVTGKDLLSPSECAVCLDDIAHEQAVRMVPGCNHGFHLECADTWLSEHPLCPVCRAKLDLENLNSSESEKNPC 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00029 132 Pfam Ring finger domain 71 114 IPR001841 -
Aip06g00029 132 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Aip06g00029 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Aip06g00029 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 132 - -
Aip06g00029 132 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 132 - -
Aip06g00029 132 SMART ring_2 72 113 IPR001841 -
Aip06g00029 132 SUPERFAMILY RING/U-box 63 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00029 Aip-Chr6 229461 230326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00029 1 132 C3H Transcription Factor Family AT5G42200 48.905 1.43e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00029 K19037 - gmx:100817919 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00029 06 229461 230326 Aip06g00029 06 229461 230326 ECH
Aip06g00029 06 229461 230326 Aip07g02387 07 100318336 100319706 PCT