Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00009 ATGAGCTGCTTCTCTTGCCTTGTTGATGATGATCACCACGGGAAGCATGGGCCCGGAGAGATGAACAGAATGGAATTATTAATTGAGAACTACTTCAAGAAGAATAATGCAGGGAGAGGGCGGAAGAAGAAGAAGCAGGATCGGGGTGAAAGCAAGACAGACGCTGCCATCAGCTTTGGTTTTCGGGAGCTTGAATGGGCAACCGACACTTTCAAGGAAGCCAACTTGATTGGGGAAGGCGGTTTTGGAAGGGTCTACAAGGGTCGTCTCTTGACAGGCCAGGTGGTTGCTGTAAAACAATTAAATCATGACGGGCATCAAGGTTTTCAAGAATTTGTGACGGAGGTGCTTATGCTTAGCCTCCTCCACCATTCTAATCTCGTTAACTTGATTGGCTATTGCACCGATGGTGAGCAGAGGCTGTTGGTGTATGAATATATGCCCATGGGTAGCCTTGAAGATCATCTTTTTGCGGATCCTACATTGAATAATAAGGAAGGAGGGCTAAGTTGGATAACTCGAATGAAGATCGCGGCCGGGGCTGCTCGTGGGCTGGAGTATCTCCATTGCAAAGCAAATCCACCTGTTATCTATCGCGACTTGAAATCGGCGAATATCTTATTAGACAATGATTTCAACCCAAAACTCTCAGATTTTGGGCTCGCCAAGCTAGGGCCTGTTGGAGACAACACCCATGTTTCCACCAGAGTCATGGGAACGTACGGCTACTGCGCCCCCGAATATGCCATGAGTGGAAAATTAACTCTTAAATCCGATATTTACAGCTTTGGTGTTGTCTTGCTCGAGTTGATCACTGGTCGTAAGGCCATGGATTTCACTAGAAAACAAGGCAGCCAAAACTTAGTTTCATGGGCTCGTGCTTTCTTAAGTGACAGGAAAAAGTTTAGGCAAATGGTTGACCCTCGATTGCGGGGAAGCTATCCTGTGCGTTGCATGCATCATGCGATTTGTATAACCGCAATGTGTCTCCAGGACCAACCAATTTTCCGTCCACATGTTCGTGATATTGTTGCTGCACTAGATTACATAGTTTCTCAGAGTATTCTTGAACTCGATAAGCATGGAAGACTGTCTGACATCAACTCATCACAACAAGAACCACAACCGCAAATTGCCACAAGTTAA 1146 0.4599 MSCFSCLVDDDHHGKHGPGEMNRMELLIENYFKKNNAGRGRKKKKQDRGESKTDAAISFGFRELEWATDTFKEANLIGEGGFGRVYKGRLLTGQVVAVKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVNLIGYCTDGEQRLLVYEYMPMGSLEDHLFADPTLNNKEGGLSWITRMKIAAGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAMDFTRKQGSQNLVSWARAFLSDRKKFRQMVDPRLRGSYPVRCMHHAICITAMCLQDQPIFRPHVRDIVAALDYIVSQSILELDKHGRLSDINSSQQEPQPQIATS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00009 381 SMART serkin_6 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00009 381 CDD STKc_IRAK 77 348 - -
Aip06g00009 381 Gene3D Transferase(Phosphotransferase) domain 1 147 369 - -
Aip06g00009 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Aip06g00009 381 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Aip06g00009 381 SUPERFAMILY Protein kinase-like (PK-like) 56 347 IPR011009 -
Aip06g00009 381 Pfam Protein kinase domain 72 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00009 381 PANTHER OS07G0668900 PROTEIN 40 355 - -
Aip06g00009 381 PANTHER OS07G0668900 PROTEIN 40 355 - -
Aip06g00009 381 ProSiteProfiles Protein kinase domain profile. 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g00009 381 Gene3D Phosphorylase Kinase; domain 1 41 146 - -
Aip06g00009 381 PIRSF ILK 28 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00009 Aip-Chr6 79818 81399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00009 1 350 Glycoside Hydrolase AT3G07070 54.620 6.59e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Aip06g00009 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00009 - - ahf:112805431 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00009 06 79818 81399 Aip06g00009 06 79818 81399 ECH