Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g04038 ATGAGAAGAAAAGGGAGAGAGCTTCTTAACCTATGTATCTCTCTAAGCTCCCCATTGAAGCCTGAACCATGTGCATCTTCTTTTCATGGGGCTTCTAGAACTTTCTCACCATTTTCCGCTTCTTCTTCTTCCTTCTCCTCCTCCTCCAGCACCCTAACCCCTTGTGTTGAAGATGAAAAGGCTTCGGCAGCGTCCAAGACGCAGAAAGAATCAATGATTTTGGAAGAGTTCAGACAAAGGAAGCTGAAAGGGACTTCATCAAGTTCTTCTTCTCCTGATGGCGGTGCTGAGAAGAAAGAGGGGGAGTCCACTATGGTGGTTTCCAACTTCAGGGAGTTGGGTGTGGCTGAGGAGCTTGCTGAGGTTTTGGAAAAGATTGGTGATGGTGTTCCGAGTGAGATACAATGTGTTGTTATTCCAGCTGTTTTGGAAGGGAAGAATTTATTGTTGAGTTCACCCGCTGAACCTGACCGAACTTTGGCTTACCTGTTGCCCCTTATTCAGCTGCTGCGACATGGCGAGGTTGGTTTGGATTCAAAGCATCCCAGAGCCATTGTGCTTTGTGCTACCGAGGAGAAAGCTAATGAGTGTTTTAGTGCTGCAAAATATATCATGGAGATTGCGGAAGTGAAGTTGGCAAAGCAACGTTCTTCCCCAGATAATGAGCATTCAAATGTCTCAATTGGTCTTCTAGTCGGAACCCCTTCTGAGATTATTCAGTACGTTGAAGAGGGAACTGTTGTCCCTGCTGAAATAAGATATATGGTTTTGGATGATGTAGATTTCATGCTTGGTAGTGGCCTTGGTTCTAACATCCACAAGATTCTCGAACCATTGCAAGATCATGAATCAAAATCTTCTTACAAAAGATTGCAAACCATCCTAGTTACATCGCCGATCACCGAGGTTTTGGGTGATGAATCCCCCATTGTGAAGCATCTTGAGCGTGATCATGCTGGAAATATTTCTGCAATGTCTTTGGAAATGGATCAAAGAGAAGTGTTCCAATATACAGAGTCCCTGGATGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGACACCCTTGTGACCTTCTGTTCCGTCGCCACCGCACCGGAAACTTCGGACACCGATCACCAGACGAAGCACTCCGTCCTCCTCGAGAAGCTCAGAGTGAGACATCTCAAAGACAGTGCAAAGAGCTCAGAACTCAAGAATAAGGACCAAACAAAGAAGAATTCTTCTTCTTCTACTGGTGAAAATGAGAGTTTTGATGGGGTGGTGGTGAAAAAGAATAAGCTTGTCGGGAGTTTTGAAGAATTGGGTTTGAGTGAAGAGGTTATGGGTTCTGTTAGGGAAATGAGTATTGAAGTTCCCACTGAGATTCAGTGTATTGGTGTTCCTGCTGTCTTGCAAGAGAACAGTGTTGTGTTGGGTTCTCACACTGGCTCTGGCAAAACCCTTGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGACGAACAGTTGAATGGAATACAGTTAAAGCCCAGGAGACCTCGTGCTGTTGTGCTATGCCCTACGAGGGAGTTGTGTGAACAGGTTTTTCGAGTTGCGAAATCAATTAGTCATCATGCACGGTTCAGGTGCACAATGGTAAGTGGTGGTGGCCGTATTAGGCCTCAAGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCAACCTGGTGTATGGCGACATCAAATACTTGGTATTGGATGAGGCAGATACAATGTTTGATCGTGGCTTTGGTCCTGATATACGCAAATTTCTGGCCCCATTGAAACATCGTGCATCAAAGTCTGATGGCCTAGGTTTTCAGACCGTCTTGGTAACTGCAACAATGACAAAGGCTGTGCAAAAGCTAGTTGATGAGGAGTTTCAGGGCATTGTACATCTGCGAACATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCACGATTTTATTAAACTTTCGGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGGTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGTGATGGTTTTTTGCAATACTTTGGACTCTAGCCGTGCAGTGGATCACTACCTTGTTGAAAATATGATTCCTACTGTCAACTACCATGGGGAAGTACCAGCAGAGCAAAGGGTTGAAAACCTCAATAAGTTTAAGAATGACATTGATGATCGTCCAACATTAGTTTGCACAGACTTGGCCGCTAGGGGTCTGGACTTGGATGTAGACCATGTTGTTATGTTTGACTTCCCCTTGAACTCTATCGATTACCTTCATCGGACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACCAGTTTGGTTACAAAGAAGGACTTGATCTTGGCCACTAGAATAGAGGAGGCAATGAGGAAGAATGAGAGTTTGGAGGCTATCACGAAAGAAGGAGTACGAAGGGATATCGCCAGGACCCAAGTTAATGGGCAGAGTGGGAAGGACAGAAAATTAGTTAAAGTTTCTAAAGTTAAGAACAATCCTGGTGGACGTGCCAGTTTAGGGAATAAAGGATCAGATTTGAAATCCGGAAAAGGATCATCATCGGGAAAATCTATGAAGAAAGGGATTAAGGTTTCAAATTCTGTAAAATCCTCCAGTGCTAATAGCTCGAGAAAAGCTTCTTCAGGGGATAAGCGAACAAGTAAAAGGACCAGTGCCACCAAATCGACAAATTCTAAACTCAGTGTTGTCGGGTTTAGGGGTCGGAACTCATCATCAAACCCCTTGTGA 2799 0.4452 MRRKGRELLNLCISLSSPLKPEPCASSFHGASRTFSPFSASSSSFSSSSSTLTPCVEDEKASAASKTQKESMILEEFRQRKLKGTSSSSSSPDGGAEKKEGESTMVVSNFRELGVAEELAEVLEKIGDGVPSEIQCVVIPAVLEGKNLLLSSPAEPDRTLAYLLPLIQLLRHGEVGLDSKHPRAIVLCATEEKANECFSAAKYIMEIAEVKLAKQRSSPDNEHSNVSIGLLVGTPSEIIQYVEEGTVVPAEIRYMVLDDVDFMLGSGLGSNIHKILEPLQDHESKSSYKRLQTILVTSPITEVLGDESPIVKHLERDHAGNISAMSLEMDQREVFQYTESLDALRKKVAEAMDTLVTFCSVATAPETSDTDHQTKHSVLLEKLRVRHLKDSAKSSELKNKDQTKKNSSSSTGENESFDGVVVKKNKLVGSFEELGLSEEVMGSVREMSIEVPTEIQCIGVPAVLQENSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIQLKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRILQHIEEGNLVYGDIKYLVLDEADTMFDRGFGPDIRKFLAPLKHRASKSDGLGFQTVLVTATMTKAVQKLVDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLVPSRAKGNKVMVFCNTLDSSRAVDHYLVENMIPTVNYHGEVPAEQRVENLNKFKNDIDDRPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDLILATRIEEAMRKNESLEAITKEGVRRDIARTQVNGQSGKDRKLVKVSKVKNNPGGRASLGNKGSDLKSGKGSSSGKSMKKGIKVSNSVKSSSANSSRKASSGDKRTSKRTSATKSTNSKLSVVGFRGRNSSSNPL 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g04038 932 MobiDBLite consensus disorder prediction 390 416 - -
Aip05g04038 932 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 429 457 IPR014014 GO:0003724
Aip05g04038 932 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 825 IPR001650 -
Aip05g04038 932 MobiDBLite consensus disorder prediction 37 56 - -
Aip05g04038 932 CDD DEADc 440 639 - -
Aip05g04038 932 SMART helicmild6 701 783 IPR001650 -
Aip05g04038 932 SMART ultradead3 448 667 IPR014001 -
Aip05g04038 932 SMART ultradead3 127 332 IPR014001 -
Aip05g04038 932 MobiDBLite consensus disorder prediction 862 897 - -
Aip05g04038 932 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 318 IPR014001 -
Aip05g04038 932 CDD SF2_C_DEAD 660 792 - -
Aip05g04038 932 MobiDBLite consensus disorder prediction 908 932 - -
Aip05g04038 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 302 IPR027417 -
Aip05g04038 932 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 48 302 - -
Aip05g04038 932 Pfam Helicase conserved C-terminal domain 672 783 IPR001650 -
Aip05g04038 932 Gene3D - 658 825 IPR027417 -
Aip05g04038 932 Pfam DEAD/DEAH box helicase 453 636 IPR011545 GO:0003676|GO:0005524
Aip05g04038 932 SUPERFAMILY PABC (PABP) domain 303 358 IPR036053 GO:0003723
Aip05g04038 932 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 48 302 - -
Aip05g04038 932 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 346 858 - -
Aip05g04038 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 795 IPR027417 -
Aip05g04038 932 Gene3D - 53 306 IPR027417 -
Aip05g04038 932 MobiDBLite consensus disorder prediction 37 103 - -
Aip05g04038 932 Gene3D - 388 648 IPR027417 -
Aip05g04038 932 SMART poly_2 298 358 IPR002004 GO:0003723
Aip05g04038 932 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 346 858 - -
Aip05g04038 932 MobiDBLite consensus disorder prediction 827 932 - -
Aip05g04038 932 Pfam Poly-adenylate binding protein, unique domain 309 355 IPR002004 GO:0003723
Aip05g04038 932 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 460 647 IPR014001 -
Aip05g04038 932 Pfam DEAD/DEAH box helicase 133 297 IPR011545 GO:0003676|GO:0005524
Aip05g04038 932 Gene3D - 307 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g04038 Aip-Chr5 148615950 148622134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g04038 428 805 Eukaryotic Initiation Factors Gene Family AT3G19760 28.756 1.81e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g04038 - - vun:114182370 828.165