Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g04017 ATGGGTCGGTGCCGAGCTGCTTCGCGCCTTGCGGACGATGATCCGAACCTAAGATCCAAGAAAAAAAAGGCTGCTTTGAATGTAGAGAATTTAGACACTTCATCCCCAGATGTGGCAGCTCAAGGAGTAACTGATGGGAAAGGAGCTTTATACCACTGCAATTATTGCAACAAAGATATTTCAAGGATGATTCGCATTAAGTGTGCTGTATGTCAAGATTTTGATCTCTGCATAGAGTGTTTCTCTGTTGGGGCTGAAGTGACACCTCACAAAAGCAATCATCCATATATGATTATGGATAATCTATCTTTTCCCCTTATAACTCCAGATTGGAATGCAGATGAAGAGATGTTACTTTTAGAGGGCATTGAGATGTATGGATTTGGGAATTGGAATGAAGTTGCTGAGTATGTTGGGACAAAAAGCAAATCTCAATGTATTGACCATTATAATGCTATATATATGAATTCACCGTGCTTTCCTCTCCCTGTAAGTGTATTTGAGAATGCTCTCATTGCTTTCATATTTGAGTGGTCTAATTGTCACATGCACACCCAGGATTTGTCACATGTTATGGGAAAAAACAAAGAGGAACTTCTTGAGATGGCAAAGGGACATGAAGTCAAGAAAGGTTTGTTTCTATATAATTTAAAATCACAGTTTTTGGAGATTATGATTTTCTTATTTTATATGGATTACATTGGTTCAGTATGTGGCAAAACTTACTCAAGTACGATTAAGAAGGCTTCCAATGTGAGCCAGAATGCAGATGGAGTTAAGATGGAAGGTATGTATTCTGATTCAGATCGGAGCATTGGAGAGAAGAAACCGAAGTTATCTGGCAAAGTTGAGCCTTCTGTGACCGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTCGAAGTTGAATATGACAATGATGCAGAGCAAGTATTAGCAGATATGGAATTTAAGGACATCGATACTGAGTCTGAACGTGAAATGAAACTGCATGTGCTCCGTATTTATTCAAGAAGATTAGATGAGCGGAAGCGCAGAAAGAATTTTATACTTGAAAGAAATTTACTTTATCCTGATCCATTTGAGAAAAGTCTCTCTCCTGAGGAGGTTGAAATATGTCAGCGCTATAAGGTCTTCACACGGTTTCACTCGAAAGAAGAGCATATGGAGTTGCTCAAAAATATTATTGAAGAACACAGGCTTATCAAAAGAATACAGGATTTGCAGGAAGCACATACTGCTGGCTATCAAACATCTACAGAGGCTTACAAATTTATCGAACAGAAGAAAAAAGAAGCGGAACGTGTTGTTAAAGAAAATAATCATATTGGTGTTGGTGCTAAGATATTACCAAGACCGAATTATCTCAAAGGAGAACTTGATAGCAACTCACTGGGTCTTCATAAGGATATTACAGCTCCACTTTCTGGGGTGAAGTATCCAGCTGTGGCCATACAGGATATATCAAGATCTCTAGAAGAATGGGATATTAGTGGATTTGCCGGGGCTGAACTGCTGTCTGAATCTGAGATAAATCTTTGTAATGAGATCAGAATACTACCATCACACTATTTCAAAATGCAGCATGTCTTATCATCAGAAATTTCAAAGGGCAACATATCGAAGAAATGTGATGCGCATAGGTTGTTCAAGGTCGAGCCAAGCAAGGTTGATAGAGTTTATGATATGCTTATAAAAAAGGGGATTGCTCCTTCAAATTGA 1722 0.385 MGRCRAASRLADDDPNLRSKKKKAALNVENLDTSSPDVAAQGVTDGKGALYHCNYCNKDISRMIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYMIMDNLSFPLITPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGTKSKSQCIDHYNAIYMNSPCFPLPVSVFENALIAFIFEWSNCHMHTQDLSHVMGKNKEELLEMAKGHEVKKGLFLYNLKSQFLEIMIFLFYMDYIGSVCGKTYSSTIKKASNVSQNADGVKMEGMYSDSDRSIGEKKPKLSGKVEPSVTELSGYSFKREEFEVEYDNDAEQVLADMEFKDIDTESEREMKLHVLRIYSRRLDERKRRKNFILERNLLYPDPFEKSLSPEEVEICQRYKVFTRFHSKEEHMELLKNIIEEHRLIKRIQDLQEAHTAGYQTSTEAYKFIEQKKKEAERVVKENNHIGVGAKILPRPNYLKGELDSNSLGLHKDITAPLSGVKYPAVAIQDISRSLEEWDISGFAGAELLSESEINLCNEIRILPSHYFKMQHVLSSEISKGNISKKCDAHRLFKVEPSKVDRVYDMLIKKGIAPSN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g04017 573 Gene3D - 487 570 IPR036388 -
Aip05g04017 573 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 185 571 - -
Aip05g04017 573 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 162 - -
Aip05g04017 573 ProSiteProfiles Zinc finger ZZ-type profile. 48 104 IPR000433 GO:0008270
Aip05g04017 573 ProSiteProfiles SANT domain profile. 106 158 IPR017884 -
Aip05g04017 573 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 159 IPR017930 -
Aip05g04017 573 SMART sant 107 156 IPR001005 -
Aip05g04017 573 CDD SANT 111 151 IPR001005 -
Aip05g04017 573 SUPERFAMILY RING/U-box 51 114 - -
Aip05g04017 573 Gene3D - 47 99 IPR043145 -
Aip05g04017 573 SMART zz_5 47 92 IPR000433 GO:0008270
Aip05g04017 573 Pfam Zinc finger, ZZ type 51 91 IPR000433 GO:0008270
Aip05g04017 573 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 185 571 IPR034318 GO:0003713|GO:0006357|GO:0035065
Aip05g04017 573 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 162 IPR034318 GO:0003713|GO:0006357|GO:0035065
Aip05g04017 573 SUPERFAMILY Homeodomain-like 490 569 IPR009057 -
Aip05g04017 573 ProSitePatterns Zinc finger ZZ-type signature. 53 80 IPR000433 GO:0008270
Aip05g04017 573 ProSiteProfiles Myb-like domain profile. 111 154 IPR001005 -
Aip05g04017 573 PIRSF Txn_adaptor_ADA2 39 572 IPR016827 GO:0003713|GO:0006357|GO:0035065
Aip05g04017 573 Pfam Myb-like DNA-binding domain 110 151 IPR001005 -
Aip05g04017 573 ProSiteProfiles SWIRM domain profile. 486 573 IPR007526 GO:0005515
Aip05g04017 573 SUPERFAMILY Homeodomain-like 103 157 IPR009057 -
Aip05g04017 573 CDD ZZ_ADA2 51 99 IPR041983 -
Aip05g04017 573 Gene3D - 109 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g04017 Aip-Chr5 148428951 148440476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g04017 1 573 EF-hand Containing Proteins AT3G07740 49.915 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip05g04017 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g04017 K11314 - gmx:100779424 741.88