Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g04013 ATGACTGACGTGGCAAGTTCGGTGGTCCATGAGGTTTTGGGACGAAGGGTTCTCGACGTGGATCAGCCAATCGTTGATTACATCGTGAACGTCCTCGCCGACGACGACTTTGATTTCGGACTCGACGGCGAAGGCGCCTTCGAAGCCCTAGGAGAACTTCTTGTCGCCGCTGGCTGCGTCGACGATTTCTCCGAGTGCCGCACGGTGTGTAGCAAGCTGACTGATAAGTTTGGGAAGCATGGTTTGGTAAAGGCGAAGCCAACGGTGCGAAGTCTTGCGGCGCCGTTTAGGATGAATGAGGGAATGGATGAAGGGCAAGCTAAGAAGAAGAAGCCCGAGCCTGTTGATGGCCCTTTGCTCTCTGAACGCGACCGCATGAAGCTCGATAGGAGAAAGAGAAAGGAGGAACGCCAGAGAGAGGCGCAATACCAAATGCACTTAGCAGAGATGGAAGCAGCACGGGCAGGGATGCCGGTTGTATGTGTTAGGCATGAAGGTATTGGTGGAGCAGCTGTGAAGGACATTCATATGGAGGGCTTCAATATCTCTGTTGGTGGCCGTGATCTCATTGTTGACGGTTCAGTTACACTTTCCTTTGGAAGGCATTATGGCCTTGTTGGAAGAAATGGTACAGGCAAAACTACTTTCCTCAGGCACATGGCTATGCATGCCATTGATGGTATTCCAATGAACTGTCAGATATTGCATGTGGAACAAGAGGTTGTTGGTGATAATACAACTGCCTTGCAGTGTGTTCTCAATGCTGACATTGAACGAACTCAACTTTTGGAGGAAGAAGCTCAATTGCTTGCCAAACAGAGGGAACTTGAGGAGAAAAATGGACAAAGCAATGGGGAGGTTCATAAAGATGGTATTTCGCAAAGACTCGAGGAAATATACAAGAGGCTTGAGTTAATTGATGCTTATTCTGCAGAGGCACGTGCAGCATCGATACTCGCGGGTCTTAGTTTCTCTCCTGAGATGCAGAAGAAAGCAACAAAAACTTTTTCTGGAGGATGGCGGATGCGCATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATGTTACTTCTTGATGAGCCTACAAATCATCTTGATCTTCATGCTGTCCTATGGCTTGAATCATACTTGGTTAAATGGCCAAAAACATTTATCGTTGTTTCTCATGCCAGGGAATTTTTAAATACGGTGGTTACTGATATAATTCACTTACAAGCTCAGAAGCTGACTACATACAGAGGGAATTATGATACTTTTGAGAAGACACGAGAAGAACAAATCAAGAACCAGCAAAAAGCACTAGAGGCAAACGAACGTTCAAGATCTCATATGCAGTCCTTCATTGATAAGTTCCGCTATAATGCCAAGAGAGCATCCCTTGTTCAATCCAGAATCAAGGCTTTGGAACGAATGGGCCATGTGGATGAAATTATTAACGATCCTGATTACAAATTTGAGTTCCCCACCCCAGATGATAGACCGGGCCCACCCATCATAAGCTTCAGTGATGCATCATTTGGTTATCCTGGGGGACCCATTCTATTTAAGAATTTGAATTTCGGCATAGACCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGCAAGTCGACTATACTCAAATTAATTGCTGGGGAACTAAATCCTAGTTCTGGGACAGTTTTCCGATCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCATCATGTTGATGGACTGGACTTATCTTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGTGTTCCAGAGCAGAAGCTTCGAGCTCATTTAGGATCTTTTGGTGTAACGGGAAATCTCGCACTTCAACCAATGTATACTTTATCAGGGGGTCAGAAAAGCAGAGTTGCATTTGCTAAGATAACTTTCAAGAAGCCACATATAATATTGCTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTCGAGGCGCTAATTCAAGGACTGGTGATGTTCCAAGGAGGCATTCTCATGGTGAGTCATGATGAGCACCTCATATCCGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGACGCCATTCCAGGGCAACTTCCAAGATTATAAGAAGATACTCCAATCTTAG 2130 0.4563 MTDVASSVVHEVLGRRVLDVDQPIVDYIVNVLADDDFDFGLDGEGAFEALGELLVAAGCVDDFSECRTVCSKLTDKFGKHGLVKAKPTVRSLAAPFRMNEGMDEGQAKKKKPEPVDGPLLSERDRMKLDRRKRKEERQREAQYQMHLAEMEAARAGMPVVCVRHEGIGGAAVKDIHMEGFNISVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPMNCQILHVEQEVVGDNTTALQCVLNADIERTQLLEEEAQLLAKQRELEEKNGQSNGEVHKDGISQRLEEIYKRLELIDAYSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQAQKLTTYRGNYDTFEKTREEQIKNQQKALEANERSRSHMQSFIDKFRYNAKRASLVQSRIKALERMGHVDEIINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELNPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVTPFQGNFQDYKKILQS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g04013 709 Coils Coil 259 282 - -
Aip05g04013 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 701 IPR027417 -
Aip05g04013 709 MobiDBLite consensus disorder prediction 95 138 - -
Aip05g04013 709 CDD ABCF_EF-3 500 692 - -
Aip05g04013 709 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 708 - -
Aip05g04013 709 Pfam ABC transporter 194 364 IPR003439 GO:0005524
Aip05g04013 709 Pfam ABC transporter 517 647 IPR003439 GO:0005524
Aip05g04013 709 ProSitePatterns ABC transporters family signature. 336 350 IPR017871 GO:0005524
Aip05g04013 709 PANTHER NON-TRANSPORTER ABC PROTEIN 121 708 - -
Aip05g04013 709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 500 709 IPR003439 GO:0005524
Aip05g04013 709 CDD ABCF_EF-3 175 409 - -
Aip05g04013 709 Pfam ABC transporter 403 483 IPR032781 -
Aip05g04013 709 Gene3D - 462 709 IPR027417 -
Aip05g04013 709 SMART AAA_5 199 409 IPR003593 -
Aip05g04013 709 SMART AAA_5 525 692 IPR003593 -
Aip05g04013 709 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524
Aip05g04013 709 Gene3D - 178 458 IPR027417 -
Aip05g04013 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 434 IPR027417 -
Aip05g04013 709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 432 IPR003439 GO:0005524
Aip05g04013 709 MobiDBLite consensus disorder prediction 102 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g04013 Aip-Chr5 148371717 148382074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g04013 456 661 Calmodulin-binding Proteins AT2G36910 26.337 2.45e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g04013 K06158 - gmx:547980 1255.35