Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g04004 ATGGCTGACCATGGCATCACCATGTCGCTTTCCCACACCTCCGACGACTCCTCCTCCGACCACAACACCCCTGCCACCGCTGCTGCCGTCGTCTCCAGGAGGCTGCCACCCTCGTCGTCCACCGGCAACCATTCATACCACCATCACCTCTCCGAGCCGCCGCCCCAGAAGAAGCCACGTGGCAGGCCTCCGGGGTCCAAGAATAAGCCGAAGCCACCCGTGGTGATCACCCAGGAAAGCGACCACGTGATGAAACCGGTGGTGATCGAGGTTGCCGCCGGCTCGGATGTGGTGGAGGCGGTGGTGAGTTTTGCCCGGCGGCGCCAGGTAAGCTTGTCAGTGTTGAGTGGGTCAGGAACCATTGCGAACGTCACCTTACGTCACCCTTACTCACATGCTCCTGCATTAACCCTCCATGGACCCTTCACCTTGTTGTCATTCTCTGGAAGCTACATCGCTGGCCCTTTCACTCCTTCACCTCGTCCTCTTCCTCTTGCCTCTCCAGCTTCCGCTTCAGCTTCAACGGATGCTTCCTCAGCTAGCCCTACCCCCACCTGCTCCAGCTTCGCTGTTTCCTTCTCCGGTTCCCAGGGACAGATCTTCGGCGGGGTTGTGGCCGGGACACTCGTGGCGGCCAGCACGGTTGTGGTGTCGGCCTCCATCTTCAAGAGGCCTGAGTTCCACCAGGTTGGCGAGGGTGTCAGTGCTGGTGGTCGTGACGGTGACAATAAGGACGACGCTGATCGTCATAATAACTACAGTAATGCAGTTGTGAGTGAGAACCCTCTTACTGTGTTCAATGTGGGGAATGCCGGTGGTGGAGGAAACGGCATCAATAATAGCCACCCTGCTGATGTGAACGTCATGCAATGGGGCCACACTCTCTCGGCTTCTCGCGCTGCCAATTACTGA 912 0.5855 MADHGITMSLSHTSDDSSSDHNTPATAAAVVSRRLPPSSSTGNHSYHHHLSEPPPQKKPRGRPPGSKNKPKPPVVITQESDHVMKPVVIEVAAGSDVVEAVVSFARRRQVSLSVLSGSGTIANVTLRHPYSHAPALTLHGPFTLLSFSGSYIAGPFTPSPRPLPLASPASASASTDASSASPTPTCSSFAVSFSGSQGQIFGGVVAGTLVAASTVVVSASIFKRPEFHQVGEGVSAGGRDGDNKDDADRHNNYSNAVVSENPLTVFNVGNAGGGGNGINNSHPADVNVMQWGHTLSASRAANY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g04004 303 MobiDBLite consensus disorder prediction 231 252 - -
Aip05g04004 303 ProSiteProfiles PPC domain profile profile. 81 244 IPR005175 -
Aip05g04004 303 MobiDBLite consensus disorder prediction 33 47 - -
Aip05g04004 303 MobiDBLite consensus disorder prediction 7 26 - -
Aip05g04004 303 Gene3D - 84 236 - -
Aip05g04004 303 MobiDBLite consensus disorder prediction 1 79 - -
Aip05g04004 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 294 - -
Aip05g04004 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 294 IPR014476 GO:0003680
Aip05g04004 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 228 - -
Aip05g04004 303 CDD DUF296 85 217 IPR005175 -
Aip05g04004 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 222 IPR005175 -
Aip05g04004 303 PIRSF ESCAROLA 2 302 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g04004 Aip-Chr5 148305460 148306371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g04004 57 230 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 46.591 2.88e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g04004 - - ahf:112712816 450.284